CODEWITHSUNDEEP
pythonmultiprocessing
L.C
L.C

Reputation: 35

How to store all the output before multiprocessing finish?

I want to run multiprocess in python. Here is an example:

def myFunction(name,age):
     output = paste(name,age)
     return output

names = ["A","B","C"]
ages = ["1","2","3"]

with mp.Pool(processes=no_cpus) as pool:
    results = pool.starmap(myFunction,zip(names,ages))

results_table = pd.concat(results)
results_table.to_csv(file,sep="\t",index=False)

myFunction in the real case takes really long time. Sometime I have to interupt the running and start again. However the results will only be written to the output file when all pool.starmap is done. How can I store the intermediate/cache result before it's finished? I don't want to change myFunction from return to .to_csv()

Thanks!

Upvotes: 0

Views: 906

Answers (1)

Booboo
Booboo

Reputation: 44283

Instead of using map, use method imap, which returns an iterator that when iterated gives each result one by one as they become available (i.e. returned by my_function). However, the results must still be returned in order. If you do not care about the order, than use imap_unordered.

As each dataframe is returned and iterated, it is converted to a CSV file and outputted either with or without a header according to whether it is the first result being processed.

import pandas as pd
import multiprocessing as mp

def paste(name, age):
    return pd.DataFrame([[name, age]], columns=['Name', 'Age'])

def myFunction(t):
    name, age = t # unpack passed tuple
    output = paste(name, age)
    return output

# Required for Windows:
if __name__ == '__main__':
    names = ["A","B","C"]
    ages = ["1","2","3"]

    no_cpus = min(len(names), mp.cpu_count())

    csv_file = 'test.txt'

    with mp.Pool(processes=no_cpus) as pool:
        # Results from imap must be iterated
        for index, result in enumerate(pool.imap(myFunction, zip(names,ages))):
            if index == 0:
                # First return value
                header = True
                open_flags = "w"
            else:
                header = False
                open_flags = "a"
            with open(csv_file, open_flags, newline='') as f:
                result.to_csv(f, sep="\t", index=False, header=header)

Output of test.txt:

Name    Age
A       1
B       2
C       3

Upvotes: 1

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