CODEWITHSUNDEEP
pythontensorflowmachine-learningdeep-learningconv-neural-network
Shiverz
Shiverz

Reputation: 688

Tensorflow model for binary classification of 1D arrays

I am trying to build a model to classify signals based on whether or not that signal has a specific pattern in it.

My signals are just arrays of 10000 floats each. I have 500 arrays that contain the pattern, and 500 that don't.

This is how I split my dataset :

X_train => Array of signals | shape => (800, 10000)

Y_train => Array of 1s and 0s | shape => (800,)

X_test => Array of signals | shape => (200, 10000)

Y_test => Array of 1s and 0s | shape => (200,)

(X for training, Y for validating)

The pattern is just a quick increase in values followed by a quick decrease in values like so (highlighted in red) : enter image description here

Here is a signal without the pattern for reference : enter image description here

I'm having a lot of trouble building a model since I'm used to classifying images (so 2D or 3D) but not just a series of points.

I've tried a simple sequential model like so :

# create model
model = Sequential()
model.add(Dense(10000, input_dim=10000, activation='relu'))
model.add(Dense(64, activation='relu'))
model.add(Dense(64, activation='relu'))
model.add(Dense(1, activation='sigmoid'))
# Compile model
model.compile(loss='binary_crossentropy', optimizer='adam', metrics=['accuracy'])

But it's failing completely. I'd love to implement a CNN but I have no idea how to do so. When re-using some CNNs I used for image classification, I'm getting a lot of errors concerning input, which I think is because its a 1D signal instead of a 2D or 3D image.

This is what happens with a CNN I used for image classification in the past :

model_random = tf.keras.models.Sequential()

model_random = tf.keras.Sequential([
  tf.keras.layers.Conv2D(32, [3,3], activation='relu'),
  tf.keras.layers.MaxPooling2D(),
  tf.keras.layers.Conv2D(16, [3,3], activation='relu'),
  tf.keras.layers.MaxPooling2D(),
  tf.keras.layers.Conv2D(8, [3,3], activation='relu'),
  tf.keras.layers.MaxPooling2D(),
  tf.keras.layers.Flatten(),
  tf.keras.layers.Dense(128, activation='relu'),
  tf.keras.layers.Dense(1)
])

model_random.compile(optimizer = 'adam',
              loss = tf.keras.losses.SparseCategoricalCrossentropy(from_logits=True),
              metrics=['accuracy'])

model_random.fit(X_train,Y_train, epochs=30)

    ValueError: Exception encountered when calling layer "sequential_8" (type Sequential).
    
    Input 0 of layer "conv2d_6" is incompatible with the layer: expected min_ndim=4, found ndim=2. Full shape received: (32, 10000)
    
    Call arguments received:
      • inputs=tf.Tensor(shape=(32, 10000), dtype=float32)
      • training=True
      • mask=None

Upvotes: 1

Views: 1477

Answers (1)

AloneTogether
AloneTogether

Reputation: 26698

The layer tf.keras.layers.Conv1D needs the following shape: (time_steps, features), so you have to decide what are your timesteps and features. Here is a starting point / dummy model where I assume that each sample has 10000 timesteps and each timestep one float feature:

import tensorflow as tf

X_train = tf.expand_dims(tf.random.normal((800, 10000)), axis=-1)
Y_train = tf.random.uniform((800, 1), maxval=2, dtype=tf.int32)

inputs = tf.keras.layers.Input((10000, 1))
x = tf.keras.layers.Conv1D(64, kernel_size=3, activation='relu')(inputs)
x = tf.keras.layers.Conv1D(32, kernel_size=3, activation='relu')(x)
x = tf.keras.layers.GlobalMaxPool1D()(x)
x = tf.keras.layers.Dense(64, activation='relu')(x)
outputs = tf.keras.layers.Dense(1, activation='sigmoid')(x)
model = tf.keras.Model(inputs, outputs)
model.compile(loss='binary_crossentropy', optimizer='adam', metrics=['accuracy'])
model.fit(X_train, Y_train, batch_size=8, epochs=5)

Also, check out this post. In contrast to Conv2D layers, Conv1D layers apply filters to windows of n frames over the height of a tensor, while the width of the filter remains fixed. You should also consider downsampling your signals, because 10000 timesteps is a lot for one sample.

Upvotes: 1

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