CODEWITHSUNDEEP
pythonshellunixftp
Bogdan
Bogdan

Reputation: 365

Downloading files with specific name from all directories on FTP server

I would like to download all the txt files from a directory that is located an FTP server. The directory has a very complex structure, that consists in many sub-directories. Each subdirectory has a md5sum.txt file.

How can I write in script that recursively download the md5sum.txt from each sub-directory? To be more precise :

<> the directory is :
http://ftp.ebi.ac.uk/pub/databases/spot/eQTL/sumstats/

<> a sub-directory with a txt file :
http://ftp.ebi.ac.uk/pub/databases/spot/eQTL/sumstats/Alasoo_2018/exon/

Upvotes: 0

Views: 188

Answers (2)

Martin Prikryl
Martin Prikryl

Reputation: 202118

Start here: Downloading a directory tree with ftplib

Just add filter for your specific file name before the file download:

if file == "md5sum.txt":
    with open(os.path.join(destination,file),"wb") as f:
        ftp.retrbinary("RETR "+file, f.write)

Upvotes: 1

M B
M B

Reputation: 3430

You should be able to use Python's os.walk to traverse this ftp server, although you may not be able to do it as you would a normal local directory. This GitHub repo implements os.walk for FTP servers. By what I understand, you can create a new object with the path of your FTP server, but you may have to modify Walk function to check if the file name is md5sum.txt, and if it is, then download it. You could use something like the python requests library to download the file.

Upvotes: 1

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