CODEWITHSUNDEEP
rr-packagevignette
Gen
Gen

Reputation: 23

R Check Warning: View() should not be used in examples

I created my first R package which has three functions, to query the data in database and return the data frames based on user input. Since the data frames are large instead of printing them in console, I added View() within my function to show user the data extracted based on their input. Code goes like this:

queryData <- function(p, q, r, s, t){
d <- DBI::dbGetQuery(conn = con, statement = "SELECT * FROM dataset" )
  d <- d%>%
    dplyr::filter(org == p) %>%
    dplyr::filter(exp == q) %>%
    dplyr::filter(dis %like% r) %>%
    dplyr::filter(tis %like% s) %>%
    dplyr::filter(Rx %like% t)
  print(paste("No. of datasets that matched your criteria:",nrow(d)))
  View(d)
}

R check was fine, I was able to install the package and run the functions. But it gave me error when I created vignette for the package.

Here is the error message:

Error: processing vignette 'package_vignette.Rmd' failed with diagnostics:
  View() should not be used in examples etc
  --- failed re-building 'package_vignette.Rmd'
  
  SUMMARY: processing the following file failed:
    'package_vignette.Rmd'
  
  Error: Vignette re-building failed.

Any advice on how to fix this issue?

Upvotes: 1

Views: 84

Answers (1)

Giulio Centorame
Giulio Centorame

Reputation: 700

As the error message mentioned, View() is not made for RMarkdown, which is what the package vignettes are written in. The R Markdown cookbook suggests you can display the data just by calling the object using the built-in knitr::kable(). If it's too long you can show just the first bit by subsetting it. E.g.

knitr::kable(my_table[5,5])

will print only the first 5 rows and columns of the table. There are other packages you can use too (a brief list here), which work differently depending on the desired output format.

Alternatively, you can use paged tables to avoid scrolling:

rmarkdown::paged_table(my_table)

Upvotes: 2

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