CODEWITHSUNDEEP
pythonlinuxubuntubiopythongbk
Erwin John Sioson
Erwin John Sioson

Reputation: 1

anti-SMASH antismash --check-prereqs TRACEBACK and IMPORT ERRORS

I am now trying if my recently installed anti-SMASH would work. However, the following lines appear as I type antismash --check-prereqs:

Traceback (most recent call last): File "/home/promt/asenv/bin/antismash", line 5, in from antismash.main import entrypoint File "/home/promt/asenv/lib/python3.9/site-packages/antismash/init.py", line 12, in from antismash.main import run_antismash, get_detection_modules,
File "/home/promt/asenv/lib/python3.9/site-packages/antismash/main.py", line 31, in from antismash.common import logs, record_processing, serialiser File "/home/promt/asenv/lib/python3.9/site-packages/antismash/common/record_processing.py", line 19, in from antismash.common.secmet import Record File "/home/promt/asenv/lib/python3.9/site-packages/antismash/common/secmet/init.py", line 11, in from .record import Record File "/home/promt/asenv/lib/python3.9/site-packages/antismash/common/secmet/record.py", line 25, in from .features import ( File "/home/promt/asenv/lib/python3.9/site-packages/antismash/common/secmet/features/init.py", line 6, in from .antismash_domain import AntismashDomain File "/home/promt/asenv/lib/python3.9/site-packages/antismash/common/secmet/features/antismash_domain.py", line 10, in from .domain import Domain, generate_protein_location_from_qualifiers File "/home/promt/asenv/lib/python3.9/site-packages/antismash/common/secmet/features/domain.py", line 13, in from .feature import Feature, FeatureLocation, Location File "/home/promt/asenv/lib/python3.9/site-packages/antismash/common/secmet/features/feature.py", line 13, in from antismash.common.secmet.locations import ( File "/home/promt/asenv/lib/python3.9/site-packages/antismash/common/secmet/locations.py", line 9, in from Bio.SeqFeature import ( ImportError: cannot import name 'AbstractPosition' from 'Bio.SeqFeature' (/home/promt/asenv/lib/python3.9/site-packages/Bio/SeqFeature.py)

How can I fix it? Thanks!

I also typed the following but to no avail:

antismash --help
antismash --help-showall

Upvotes: 0

Views: 119

Answers (0)

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