CODEWITHSUNDEEP
rpairwise.wilcox.test
Nmgh
Nmgh

Reputation: 135

how get p-value from wilcox.test statistics in r?

I have an experiment in which I am calling wilcox.test in r for multiple times and gather statistic output. I compute the average of these statistics and then I want to convert it to p-value. What function should I call in r to get statistic of wilcox test as input and take a p-value as output?

wilcox.statistics <- 692304.08
wilcox.pvalue <- whatFunction(wilcox.statistics) ???

Upvotes: 0

Views: 913

Answers (1)

Vin&#237;cius F&#233;lix
Vin&#237;cius F&#233;lix

Reputation: 8811

I don't know what function you are using to get the statistic, but if you run wilcox.test

x <- wilcox.test(rnorm(10), rnorm(10, 2), conf.int = TRUE) 
str(x)

Output:

List of 9
 $ statistic  : Named num 8
  ..- attr(*, "names")= chr "W"
 $ parameter  : NULL
 $ p.value    : num 0.000725
 $ null.value : Named num 0
  ..- attr(*, "names")= chr "location shift"
 $ alternative: chr "two.sided"
 $ method     : chr "Wilcoxon rank sum exact test"
 $ data.name  : chr "rnorm(10) and rnorm(10, 2)"
 $ conf.int   : num [1:2] -2.75 -1.19
  ..- attr(*, "conf.level")= num 0.95
 $ estimate   : Named num -1.93
  ..- attr(*, "names")= chr "difference in location"
 - attr(*, "class")= chr "htest"

You can get the statistic and the p.value inside the output list, and depending on your goal you can extract them or even use a package like broom:

broom::tidy(x)

Output:

# A tibble: 1 x 7
  estimate statistic  p.value conf.low conf.high method                       alternative
     <dbl>     <dbl>    <dbl>    <dbl>     <dbl> <chr>                        <chr>      
1    -1.93         8 0.000725    -2.75     -1.19 Wilcoxon rank sum exact test two.sided

Upvotes: 0

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