Annotating text data with ontologies

Question

I have a list of plant organisms (text) and I want to annotate them with ontologies(Plant ontology, Crop Ontology, Food Ontology, etc), I was using ontology lookup services to do the annotation manually but it taking soo much time, the list is about 7,000. Is there a tool, code, like that can help me do this faster. thank you.

I tried Zooma ontology annotation and NCBO bioportal annotator +, but it does not give me ontology expect the NCBI term

Answer 1

ZOOMA preferrs annotations which have human annotation support (Curated Datasource). It's likely that your terms have been annotated to NCBO by other curators.

To ask ZOOMA annotate things to Plant ontology, you need to select the ontology source first.