E_1996
Reputation: 89
Difficulties in installing ArrayFire
I installed the RcppArrayFire R package ( via https://github.com/daqana/rcpparrayfire ) and I am trying to run the following simple example:
#include <RcppArrayFire.h>
// [[Rcpp::depends(RcppArrayFire)]]
// [[Rcpp::plugins(cpp14)]]
// [[Rcpp::export]]
af::array AF_example_1( int n_rows,
int n_cols) {
af::array mat_AF = af::constant(1, n_rows, n_cols) ;
return(mat_AF);
}
It compiles fine, however I get the following error whenever I try to run it from R:
ArrayFire Exception (Internal error:998):
In ../inst/include/RcppArrayFireWrap.h:46
Error: error in Arrayfire
Also I am compiling with the following flags:
Sys.setenv(CXX14FLAGS="-O3 -march=native -mtune=native -fPIC ")
Sys.setenv(CXX_STD = "CXX14")
Sys.setenv(CXX14="/opt/rh/devtoolset-8/root/usr/bin/g++")
Is there something wrong with my code or compilation flags?
Thanks!
EDIT (note: reason for discrepancy between this info and info in comment is that i re-installed and downgraded OS for a different reason unrelated to this post) :
Session info:
R version 3.6.3 (2020-02-29)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Linux Mint 20
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8 LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_GB.UTF-8
[7] LC_PAPER=en_GB.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] rstan_2.32.3 BH_1.81.0-1 StanHeaders_2.26.28 RcppEigen_0.3.3.9.4 Rcpp_1.0.11 RcppArrayFire_0.1.0 drat_0.2.4 githubinstall_0.2.2
loaded via a namespace (and not attached):
[1] QuickJSR_1.0.8 prettyunits_1.2.0 ps_1.7.5 utf8_1.2.4 digest_0.6.33 mime_0.12 R6_2.5.1 stats4_3.6.3 httr_1.4.7
[10] ggplot2_3.4.4 pillar_1.9.0 rlang_1.1.2 curl_5.1.0 rstudioapi_0.15.0 data.table_1.14.8 miniUI_0.1.1.1 callr_3.7.3 urlchecker_1.0.1
[19] devtools_2.4.5 stringr_1.5.1 loo_2.6.0 htmlwidgets_1.6.3 munsell_0.5.0 shiny_1.8.0 compiler_3.6.3 httpuv_1.6.12 pkgconfig_2.0.3
[28] pkgbuild_1.4.2 htmltools_0.5.7 tibble_3.2.1 gridExtra_2.3 codetools_0.2-16 matrixStats_1.1.0 fansi_1.0.5 crayon_1.5.2 later_1.3.1
[37] grid_3.6.3 jsonlite_1.8.7 xtable_1.8-4 gtable_0.3.4 lifecycle_1.0.4 magrittr_2.0.3 scales_1.2.1 RcppParallel_5.1.7 cli_3.6.1
[46] stringi_1.8.2 cachem_1.0.8 fs_1.6.3 promises_1.2.1 remotes_2.4.2.1 ellipsis_0.3.2 vctrs_0.6.4 tools_3.6.3 glue_1.6.2
[55] purrr_1.0.2 processx_3.8.2 pkgload_1.3.3 parallel_3.6.3 fastmap_1.1.1 inline_0.3.19 colorspace_2.1-0 sessioninfo_1.2.2 memoise_2.0.1
[64] profvis_0.3.8 usethis_2.2.2
>
> RcppArrayFire::arrayfire_info()
ArrayFire v3.8.0 (CUDA, 64-bit Linux, build d99887a)
Platform: CUDA Runtime 11.7, Driver: 515.43.04
[0] NVIDIA GeForce GTX 970, 4021 MB, CUDA Compute 5.2
> RcppArrayFire::arrayfire_device_info()
$name
[1] "NVIDIA_GeForce_GTX_970"
$platform
[1] "CUDA"
$toolkit
[1] "v11.7"
$compute
[1] "5.2"
OS: Linux Mint 20 Cinnamon
ArrayFire version: v3.8
I installed ArrayFire using the .sh installer found here:
https://arrayfire.s3.amazonaws.com/index.html
using the following commands in the Linux terminal:
chmod +x arrayfire.sh
./arrayfire.sh
then, I had trouble installing using the configure.args argument to change the directory, i.e.:
install_github("daqana/rcpparrayfire" , configure.args = "--with-arrayfire=/home/enzo/Downloads/arrayfire" )
So I moved the install directory to /opt:
sudo mv Downloads/arrayfire /opt/arrayfire
And then I could install RcppArrayFire using:
require(drat)
drat::addRepo("daqana")
install.packages("RcppArrayFire"
EDIT 2:
If I change the variable type to f64 I get this error instead:
ArrayFire Exception (Internal error:998):
In function cuda::Module common::compileModule(const string&, const std::vector<std::basic_string<char> >&, const std::vector<std::basic_string<char> >&, const std::vector<std::basic_string<char> >&, bool)
In file src/backend/cuda/compile_module.cpp:277
NVRTC Error(7): NVRTC_ERROR_BUILTIN_OPERATION_FAILURE
Log:
nvrtc: error: failed to open libnvrtc-builtins.so.11.1.
Make sure that libnvrtc-builtins.so.11.1 is installed correctly.
0# 0x00007F6422281C3F in /opt/arrayfire/lib64/libafcuda.so.3
1# 0x00007F64232AB84C in /opt/arrayfire/lib64/libafcuda.so.3
2# 0x00007F642267BEF8 in /opt/arrayfire/lib64/libafcuda.so.3
3# 0x00007F642267F77D in /opt/arrayfire/lib64/libafcuda.so.3
4# 0x00007F6422680407 in /opt/arrayfire/lib64/libafcuda.so.3
5# 0x00007F642221B72E in /opt/arrayfire/lib64/libafcuda.so.3
6# 0x00007F6422309C3D in /opt/arrayfire/lib64/libafcuda.so.3
7# af_get_data_ptr in /opt/arrayfire/lib64/libafcuda.so.3
8# af_get_data_ptr in /opt/arrayfire/lib64/libaf
Error: error in Arrayfire
EDIT 3:
Sometimes (using the exact same program) I will instead get an aborted session message and I get the following error messages:
[42259:42259:20231126,235559.444822:ERROR process_memory_range.cc:86] read out of range
[42259:42259:20231126,235559.444856:ERROR elf_image_reader.cc:558] missing nul-terminator
[42259:42259:20231126,235559.444919:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.446864:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.446892:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.446912:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.446933:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.446952:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.446974:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447163:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447184:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447360:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447385:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447457:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447475:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447494:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447592:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447614:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447637:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447659:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447681:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447703:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447726:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447748:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447770:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447791:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447813:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447834:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447856:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447877:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447899:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447921:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447942:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447966:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.447990:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.448013:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42259:20231126,235559.448037:ERROR elf_dynamic_array_reader.h:61] tag not found
[42259:42260:20231126,235559.473501:ERROR directory_reader_posix.cc:42] opendir: No such file or directory (2)
Upvotes: 1
Views: 191