CODEWITHSUNDEEP
normalizationregistrationmaskingants
Petru Isan
Petru Isan

Reputation: 3

Getting line 593 Killed error after antsRegistrationSynQuick with mask

I am trying to register a subject CT scanner with 8 electrodes on the brain (Hounsfield > 3000) on the MNI MRI.

antsRegistrationSyNQuick.sh -d 3 -f subject_ct.nii.gz -m MNI.nii.gz -o reg_masked_ -t s -x mask.nii

The mask.nii is a binary image where voxels with intensities < 2500 (excluding electrodes and including the bone) are 1 and the rest is 0.

However, I get this error: line 593: 176212 Killed $COMMAND

What is wrong?

I was expecting to get a fairly good registration of the MNI on the subject CT, then use the inverse affine to get electrode coordinates in MNI space.

Upvotes: 0

Views: 18

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