Reputation: 1
I get the error while compiling C++ on the server using the spack virtual environment and get error
/usr/bin/ld: /home/panasun/spack/var/spack/environments/hydro/.spack-env/view/lib/libgdal.so: undefined reference to `std::__throw_bad_array_new_length()@GLIBCXX_3.4.29'
My spec is
Input spec
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- benchmark
Concretized
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[+] [email protected]%[email protected]~ipo+performance_counters build_system=cmake build_type=RelWithDebInfo generator=make arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~gssapi~ldap~libidn2~librtmp~libssh~libssh2+nghttp2 build_system=autotools libs=shared,static tls=openssl arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~docs+shared build_system=generic certs=mozilla arch=linux-debian11-zen3
[+] ^ca-certificates-mozilla@2023-05-30%[email protected] build_system=generic arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+cpanm+opcode+open+shared+threads build_system=generic patches=714e4d1 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+cxx~docs+stl build_system=autotools patches=26090f4,b231fcc arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~debug~pic+shared build_system=generic arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools patches=bbf97f1 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~symlinks+termlib abi=none build_system=autotools patches=7a351bc arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+compat+new_strategies+opt+pic+shared build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=generic arch=linux-debian11-zen3
[e] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~guile build_system=generic arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=makefile arch=linux-debian11-zen3
Input spec
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- libtomlc99
Concretized
--------------------------------
[+] [email protected]%[email protected]~debug build_system=generic arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=generic arch=linux-debian11-zen3
[e] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
Input spec
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- cmake
Concretized
--------------------------------
[+] [email protected]%[email protected] build_system=autotools stackstart=0 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~ipo build_system=cmake build_type=Release generator=make arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~contract~coroutine+date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy~pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace+system~taggedlayout~test+thread+timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=11 patches=5da7ad2,e13cca1 visibility=hidden arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~gssapi~ldap~libidn2~librtmp~libssh~libssh2+nghttp2 build_system=autotools libs=shared,static tls=openssl arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~symlinks+termlib abi=none build_system=autotools patches=7a351bc arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~ipo build_system=cmake build_type=Release generator=make arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~ipo+openmp~stat_dysect~static build_system=cmake build_type=Release generator=make arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~ipo+shared+tm build_system=cmake build_type=Release cxxstd=default generator=make patches=91755c6 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+pic build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~debuginfod+exeprefix+nls build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~debug~pic+shared build_system=generic arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools zip=pigz arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=makefile arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~pic build_system=autotools libs=shared,static arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+programs build_system=makefile compression=none libs=shared,static arch=linux-debian11-zen3
[+] ^libdwarf@20180129%[email protected] build_system=generic arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=generic arch=linux-debian11-zen3
[e] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~guile build_system=generic arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~atomics~cuda~gpfs~internal-hwloc~internal-libevent~internal-pmix~java~legacylaunchers~lustre~memchecker~openshmem~orterunprefix~romio+rsh~static+vt+wrapper-rpath build_system=autotools fabrics=none romio-filesystem=none schedulers=none arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~cairo~cuda~gl~libudev+libxml2~netloc~nvml~oneapi-level-zero~opencl+pci~rocm build_system=autotools libs=shared,static arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+pic~python+shared build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+openssl build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~docs+shared build_system=generic certs=mozilla arch=linux-debian11-zen3
[+] ^ca-certificates-mozilla@2023-05-30%[email protected] build_system=generic arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools patches=440b954 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools patches=4e1d78c,62fc8a8,ff37630 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+gssapi build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+shared build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~color build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~obsolete_api build_system=autotools patches=4885da3 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+cpanm+opcode+open+shared+threads build_system=generic patches=714e4d1 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+cxx~docs+stl build_system=autotools patches=26090f4,b231fcc arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools patches=bbf97f1 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~docs+pmi_backwards_compatibility~python~restful build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+compat+new_strategies+opt+pic+shared build_system=autotools arch=linux-debian11-zen3
Input spec
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- mpileaks
Concretized
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[+] [email protected]%[email protected]~guile build_system=generic arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=generic arch=linux-debian11-zen3
[e] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
Input spec
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- gdal
Concretized
--------------------------------
[+] [email protected]%[email protected]~archive~armadillo~arrow~basisu~blosc~brunsli~cfitsio~crnlib~cryptopp~csharp+curl~deflate~ecw+expat~filegdb~freexl~fyba+geos~gif~gta~hdf4~hdf5~hdfs~heif~iconv~idb~ipo~java+jpeg~jxl~kdu~kea~lerc~libaec~libcsf~libkml~liblzma~libqb3~libxml2~luratech~lz4~mongocxx~mrsid~mssql_ncli~mssql_odbc~mysql~netcdf~odbc~odbccpp~ogdi~opencad~opencl~openexr~openjpeg~openssl~oracle~parquet~pcidsk~pcre2~pdfium+png~podofo~poppler~postgresql~python~qhull~rasterlite2~rdb~sfcgal~spatialite+sqlite3~teigha~tiledb~webp~xercesc~zstd build_system=cmake build_type=Release generator=ninja patches=52459dc arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~guile build_system=generic arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~symlinks+termlib abi=none build_system=autotools patches=7a351bc arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~gssapi~ldap~libidn2~librtmp~libssh~libssh2+nghttp2 build_system=autotools libs=shared,static tls=openssl arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~docs+shared build_system=generic certs=mozilla arch=linux-debian11-zen3
[+] ^ca-certificates-mozilla@2023-05-30%[email protected] build_system=generic arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+cpanm+opcode+open+shared+threads build_system=generic patches=714e4d1 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+cxx~docs+stl build_system=autotools patches=26090f4,b231fcc arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~debug~pic+shared build_system=generic arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+libbsd build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=generic arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~ipo+shared build_system=cmake build_type=Release generator=ninja arch=linux-debian11-zen3
[e] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~ipo build_system=cmake build_type=Release generator=make arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+jpeg+proj+zlib build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~ipo~jpeg8~partial_decoder+pic build_system=cmake build_type=Release generator=make libs=shared,static arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~ipo~pic build_system=cmake build_type=Release generator=make libs=shared,static arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+ccitt~ipo~jbig+jpeg~jpeg12~lerc~libdeflate+logluv~lzma+lzw+next~old-jpeg+packbits~pic~pixarlog+shared+thunder~webp+zlib~zstd build_system=cmake build_type=Release generator=make arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+re2c build_system=generic arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+pic~python+shared build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools zip=pigz arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=makefile arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+programs build_system=makefile compression=none libs=shared,static arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~obsolete_api build_system=autotools patches=4885da3 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~pic build_system=autotools libs=shared,static arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=generic arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+curl~ipo~pic+shared+tiff build_system=cmake build_type=Release generator=make arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+column_metadata+dynamic_extensions+fts~functions+rtree build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools patches=bbf97f1 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+compat+new_strategies+opt+pic+shared build_system=autotools arch=linux-debian11-zen3
Input spec
--------------------------------
- gmake
Concretized
--------------------------------
[+] [email protected]%[email protected]~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~gssapi~ldap~libidn2~librtmp~libssh~libssh2+nghttp2 build_system=autotools libs=shared,static tls=openssl arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~docs+shared build_system=generic certs=mozilla arch=linux-debian11-zen3
[+] ^ca-certificates-mozilla@2023-05-30%[email protected] build_system=generic arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+cpanm+opcode+open+shared+threads build_system=generic patches=714e4d1 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+cxx~docs+stl build_system=autotools patches=26090f4,b231fcc arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~debug~pic+shared build_system=generic arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools patches=bbf97f1 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=generic arch=linux-debian11-zen3
[e] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~guile build_system=generic arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~symlinks+termlib abi=none build_system=autotools patches=7a351bc arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+compat+new_strategies+opt+pic+shared build_system=autotools arch=linux-debian11-zen3
Input spec
--------------------------------
- gcc
Concretized
--------------------------------
[+] [email protected]%[email protected]~binutils+bootstrap~graphite~nvptx~piclibs~profiled~strip build_system=autotools build_type=RelWithDebInfo languages='c,c++,fortran' arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~nls build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools patches=bbf97f1 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=generic arch=linux-debian11-zen3
[e] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~guile build_system=generic arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+cxx build_system=autotools libs=shared,static patches=69ad2e2 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools patches=440b954 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools libs=shared,static arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools libs=shared,static arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+cpanm+opcode+open+shared+threads build_system=generic patches=714e4d1 arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+cxx~docs+stl build_system=autotools patches=26090f4,b231fcc arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~debug~pic+shared build_system=generic arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+pic~python+shared build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools zip=pigz arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=makefile arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~pic build_system=autotools libs=shared,static arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]~symlinks+termlib abi=none build_system=autotools patches=7a351bc arch=linux-debian11-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+compat+new_strategies+opt+pic+shared build_system=autotools arch=linux-debian11-zen3
[+] ^[email protected]%[email protected]+programs build_system=makefile compression=none libs=shared,static arch=linux-debian11-zen3
Do you have any suggestions or any dependencies I have to add? If you want more detail, please let me know.
Upvotes: 0
Views: 161