Reputation: 1
I'm trying to analyze a dataset where there are 3 different categorical outcomes, so I think I need to do a multinomial logit regression, but I want to be able to include the test subject as a random effect since I did repeated measures for each subject (albeit 3 of the 20 subjects I only have 1 replicate for, which might also be problematic). I have looked at other threads, including this one.
Most straightforward R package for setting subject as random effect in mixed logit model
However, I don't think the answer to this thread is straightforward either and I've tried other packages which either give me error messages or are hard to interpret.
I tried following the mixcat code (see link below), but I don't know how to interpret the output of it (i.e., if my model coefficients are significant or not)
https://stats.stackexchange.com/questions/492998/multinomial-glmm-with-glmmadmb-in-r
I tried the mgcv::gam code as well.
Anyway, the only reason I want to do a mixed effects model is to account for repeated measures among my test subjects, and that's it. Any suggestions (ideally with a similar syntax to using glm or lmer) would be greatly appreciated. Thanks!
install.packages("mixcat")
library(mixcat)
lionfish_data$Lionfish_ID <- as.factor(lionfish_data$Lionfish_ID)
lionfish_data$Init_pref <- as.factor(lionfish_data$Init_pref)
attach(lionfish_data)
model.po <- npmlt(formula = Init_pref ~ inv_Lionfish_wt_g + Prey_wt_ratio,
formula.npo = ~ 1,
id = Lionfish_ID,
k = 2)
summary(model.po)
detach(lionfish_data)
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