CODEWITHSUNDEEP
pythonjupyter-notebookcondageospatialpysqlite
edge-case
edge-case

Reputation: 1344

segment-geospatial installation breaks jupyter lab in Ubuntu

I would like to install jupyter inside a conda environment and then install segment-geospatial, a python library from samgeo.

However installing segment-geospatial breaks something that causes jupyter notebooks to stop working. Jupyter lab works before I install the package. After I install it, I receive the following error when I try to start jupyter lab:

ModuleNotFoundError: No module named 'pysqlite2'

Any ideas on how to fix this?

Here's the steps I took:

conda create -c conda-forge -n MY_ENV_NAME python pandas jupyter ipykernel

conda activate MY_ENV_NAME
jupyter lab
# jupyter lab opens fine

conda install segment-geospatial
#install completes fine

jupyter lab
# jupyter lab does not open, I receive the error:

ModuleNotFoundError: No module named 'pysqlite2'

I'm using Ubuntu 22.04

Upvotes: 1

Views: 16

Answers (1)

edge-case
edge-case

Reputation: 1344

Try installing segment-geospatial following documentation for samgeo on their Installation page, then installing jupyter inside your environment.

These steps worked for me to avoid breaking jupyter lab or jupyter notebooks.

conda create -n MY_ENV_NAME python
conda activate MY_ENV_NAME
conda install -c conda-forge mamba
mamba install -c conda-forge segment-geospatial

#install optional dependencies
mamba install -c conda-forge groundingdino-py segment-anything-fast

#install jupyter last
conda install jupyter

#open jupyter lab
jupyter lab

With this installation order, jupyter lab installs fine and I can use segment-geospatial inside my jupyter notebooks.

Upvotes: 0

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