StackOverflow Questions for Tag: fastq

João Sequeira

Reputation: 67

Large files for GitHub CICD

githubcontinuous-integrationcontinuous-deploymentfastq

Score: 5

Answers: 1

Alejandra Diaz

Reputation: 11

Making a loop for Fastq Quality control in Biopyton

bioinformaticsbiopythonfastq

Score: 1

Answers: 1

Bella

Reputation: 1017

How to get a base file name from a path without multiple extensions

pythonstringpathfastq

Score: 4

Answers: 3

iiaawaak

Reputation: 27

multiple .bam to .fastq files with samtools

fastqsamtoolsbam

Score: 0

Answers: 0

Desmodus1984

Reputation: 11

How to classify/demultiplex fastq files using header

barcodefastq

Score: 1

Answers: 0

Limbo

Reputation: 29

Fastp can not open a file

fastq

Score: 0

Answers: 1

Peter Pisher

Reputation: 491

BASH Find Exec Custom Function

bashfastq

Score: 1

Answers: 1

ShannonTown

Reputation: 29

How to extract sequence from a fastq file and save as new file for each sequence

awkfastq

Score: 1

Answers: 3

wayne_szalinsky

Reputation: 17

Extracting ID and sequence from a FASTQ file

awksedtext-manipulationfastq

Score: 0

Answers: 3

TNAU

Reputation: 25

Nextflow script for performing quality control and trimming the sequence

nextflowfastq

Score: 0

Answers: 2

Fafa Mahbubi

Reputation: 1

fastq files name containing "tmp"

tmpfastqaksequencer

Score: 0

Answers: 0

Derek

Reputation: 11

How do I pull down single cell RNA sequencing data from NCBI and process with python?

pythonfastqncbirna-seq

Score: 1

Answers: 0

Shi Ming Tan

Reputation: 1

Concatenate FASTQ files from 2 folders with the same structure

bashfastq

Score: 0

Answers: 1

jeffandcyrus

Reputation: 3

Unable to extract multiple .fastq.gz files on windows

windowscommand-line-interfacegzipfastq

Score: 0

Answers: 0

gringer

Reputation: 420

How can I do a transparent gzip uncompress from both stdin and files in perl?

fastafastqcompressionperl

Score: 3

Answers: 3

user3383071

Reputation: 23

Nextflow only processes one of my paired-end samples

processnextflowfastq

Score: 0

Answers: 0

ljc

Reputation: 938

Read Fastq file directly into Pandas Dataframe

pythonpandasbashbioinformaticsfastq

Score: 0

Answers: 2

Paul

Reputation: 696

Parallelizing python script with a python wrapper

pythonparallel-processingbioinformaticsjoblibfastq

Score: 0

Answers: 4

Dan

Reputation: 21

Getting reads from one fastq file that are not found in another fastq file

bioinformaticsbiopythonfastq

Score: 2

Answers: 3

PesKchan

Reputation: 978

Adding retry to shell script

shellfastqncbicommon-workflow-language

Score: 0

Answers: 1

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StackOverflow Questions for Tag: fastq

Large files for GitHub CICD

Making a loop for Fastq Quality control in Biopyton

How to get a base file name from a path without multiple extensions

multiple .bam to .fastq files with samtools

How to classify/demultiplex fastq files using header

Fastp can not open a file

BASH Find Exec Custom Function

How to extract sequence from a fastq file and save as new file for each sequence

Extracting ID and sequence from a FASTQ file

Nextflow script for performing quality control and trimming the sequence

fastq files name containing &quot;tmp&quot;

How do I pull down single cell RNA sequencing data from NCBI and process with python?

Concatenate FASTQ files from 2 folders with the same structure

Unable to extract multiple .fastq.gz files on windows

How can I do a transparent gzip uncompress from both stdin and files in perl?

Nextflow only processes one of my paired-end samples

Read Fastq file directly into Pandas Dataframe

Parallelizing python script with a python wrapper

Getting reads from one fastq file that are not found in another fastq file

Adding retry to shell script

fastq files name containing "tmp"