StackOverflow Questions for Tag: gff

Mary

Reputation: 51

changing column values in tab delaminated file with awk without changing values in other columns

awkbioinformaticsgff

Score: 2

Answers: 3

Allan Okwaro

Reputation: 1

htseq-count does not generate read counts as expected

linuxrna-seqgff

Score: 0

Answers: 0

apposada

Reputation: 13

Bash code with if/else/fi and awk/perl regexps does work outside snakemake but not inside a snakemake rule

regexawksnakemakegtfsgff

Score: 1

Answers: 1

Martin Kovář

Reputation: 1

AWK replace full string in TABLE2 according to TABLE1

awkbioinformaticsgff

Score: -2

Answers: 1

Alex Trevylan

Reputation: 545

Renaming Name ID in gffile.

pythongff

Score: 0

Answers: 1

Mendel

Reputation: 65

sed using while loop is very slow

bashawkwhile-loopbioinformaticsgff

Score: -1

Answers: 3

Bách Nguyễn

Reputation: 37

Handleing gff file from MISA

bashbioinformaticsdna-sequencegff

Score: 0

Answers: 1

Iacopo Passeri

Reputation: 145

Iterating through Pandas dataframe and dictionary items

pandasdataframenumpyfastagff

Score: 2

Answers: 1

Gawain

Reputation: 288

How to print fields containing specific substrings with awk?

bashawksedbioinformaticsgff

Score: 1

Answers: 2

Robbe

Reputation: 45

Biopython parsing over gff features to extract CDS

pythonbiopythonfastagff

Score: 1

Answers: 1

Morten

Reputation: 49

Adding data to a dataframe based on groups

rdplyrfile-importgff

Score: 0

Answers: 1

Morten

Reputation: 49

Sed function in shell applied to all .gff files in a directory

shellsedbioinformaticsgff

Score: 1

Answers: 1

user1567654

Reputation: 47

Problem in merging a gff file and a csv file in R

rcsvbioinformaticsbioconductorgff

Score: 1

Answers: 0

Felix Jaeger

Reputation: 13

Bcbio-gff File creation issue

pythonbioinformaticsbiopythongff

Score: 1

Answers: 1

Saraha

Reputation: 146

Cell value to column name in pandas

pythonpandasdataframegff

Score: 0

Answers: 1

sdshinghal

Reputation: 41

HTSeq-count is returning 0 for every gene, instead of expression value

bioinformaticsgff

Score: 0

Answers: 0

Papaya

Reputation: 107

How to convert output of Emboss:Palindrome into gff/bed file (perl)

perlpalindromeembossgff

Score: 1

Answers: 0

kdickson

Reputation: 23

How can I find the number of the first base of a gene in a FASTA file?

bioinformaticsdna-sequencegff

Score: 0

Answers: 1

Dysnomia

Reputation: 21

How to convert Ensembl .gff3 to 12-column .bed

file-conversionrna-seqgff

Score: 0

Answers: 1

Deepak Singh

Reputation: 1

What kind of error should be checked by a validator while validating biological file formats like GFF and FASTA

fastagff

Score: 0

Answers: 0

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