StackOverflow Questions for Tag: ncbi

Jennifer Espinoza Maldonado

Reputation: 21

Using Biopython and accessing the NCBI databases, how should my search term variable look like?

pythonbiopythonncbi

Score: 2

Answers: 0

Noamiz

Reputation: 11

BioPython Entrez article limit

biopythonncbi

Score: 1

Answers: 2

rdv

Reputation: 71

How to search using NCBI E-utilities API if your queries contain underscores

python-requestsncbi

Score: 0

Answers: 0

Yohan

Reputation: 11

Issues with downloading NCBI database

rcurlncbi

Score: 1

Answers: 0

Ahmed Alagha

Reputation: 33

After sending around 30 requests to NCBI the subsequent requests take a very long time to be retrieved

pythonhttpncbi

Score: 0

Answers: 0

Hari

Reputation: 1

Biopython Entrez module EFetch throws HTTP error 400 : Bad Request

pythonbioinformaticsbiopythonncbipubmed-api

Score: 0

Answers: 0

Chaoran

Reputation: 11

BioPython - qblast() timeout every time, running from python shell

biopythonblastncbi

Score: 0

Answers: 1

user8577141

Reputation:

expected str, bytes or os.PathLike object, not InMemoryUploadedFile

pythondjangoncbiete3

Score: 15

Answers: 5

AC Research

Reputation: 71

PSIPRED, how to install and make it work?

blastncbi

Score: 1

Answers: 1

程劲韬

Reputation: 11

how do i uninstall ncbi blast while the uninstall program failed

blastncbi

Score: 0

Answers: 1

juliandeanmoran

Reputation: 93

PubTator API doesn't return session number as expected

named-entity-recognitionncbipubmed-api

Score: 0

Answers: 1

mmischler

Reputation: 13

Finding similar DNA sequence in a specific organism with Biopython's Blast module

biopythonblastncbi

Score: 1

Answers: 1

Ralph

Reputation: 1

i get an error with magicblast.exe from NCBI in windows without further information what could be wrong

windowsblastncbi

Score: 0

Answers: 0

Julia2277

Reputation: 21

Querying NCBI for genome version across different species using biopython

pythonbioinformaticsbiopythonncbi

Score: 2

Answers: 1

Derek

Reputation: 11

How do I pull down single cell RNA sequencing data from NCBI and process with python?

pythonfastqncbirna-seq

Score: 1

Answers: 0

Avi

Reputation: 1

Can you pipeline from an FTP retrieving multiple files?

bashfastancbi

Score: 0

Answers: 2

Brianna Nissley

Reputation: 1

Why does my for loop in Python never stop running?

pythonbiopythonblastncbirentrez

Score: 0

Answers: 1

Abdullah Afzal

Reputation: 1

Why does my pattern extractor code return false positives?

pythonweb-scrapingbiopythonncbirentrez

Score: 0

Answers: 0

blackthorne18

Reputation: 85

What does this BLASTN mean: Error pre-fetching sequence data?

bioinformaticsblastncbi

Score: 0

Answers: 0

Intrastellar Explorer

Reputation: 2411

Searching Entrez based on paper title

pythonbiopythonncbipubmed

Score: 0

Answers: 1

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StackOverflow Questions for Tag: ncbi

Using Biopython and accessing the NCBI databases, how should my search term variable look like?

BioPython Entrez article limit

How to search using NCBI E-utilities API if your queries contain underscores

Issues with downloading NCBI database

After sending around 30 requests to NCBI the subsequent requests take a very long time to be retrieved

Biopython Entrez module EFetch throws HTTP error 400 : Bad Request

BioPython - qblast() timeout every time, running from python shell

expected str, bytes or os.PathLike object, not InMemoryUploadedFile

PSIPRED, how to install and make it work?

how do i uninstall ncbi blast while the uninstall program failed

PubTator API doesn&#39;t return session number as expected

Finding similar DNA sequence in a specific organism with Biopython&#39;s Blast module

i get an error with magicblast.exe from NCBI in windows without further information what could be wrong

Querying NCBI for genome version across different species using biopython

How do I pull down single cell RNA sequencing data from NCBI and process with python?

Can you pipeline from an FTP retrieving multiple files?

Why does my for loop in Python never stop running?

Why does my pattern extractor code return false positives?

What does this BLASTN mean: Error pre-fetching sequence data?

Searching Entrez based on paper title

PubTator API doesn't return session number as expected

Finding similar DNA sequence in a specific organism with Biopython's Blast module