StackOverflow Questions for Tag: ncbi

PesKchan

Reputation: 978

Adding retry to shell script

shellfastqncbicommon-workflow-language

Score: 0

Answers: 1

Epic Cabbage

Reputation: 23

How to retrieve NCBI Entrez summary using gene name with Biopython?

pythonxmlbioinformaticsbiopythonncbi

Score: 1

Answers: 1

darkwing

Reputation: 160

Extracting viral host from Genbank record or Entrez query

pythonbioinformaticsbiopythonncbi

Score: 2

Answers: 1

chan-98

Reputation: 97

Awk command to set variable name while matching a regular expression

bashawkgrepcutncbi

Score: 0

Answers: 4

Chahna Patel

Reputation: 43

Why do I get BioPython HTTPError: HTTP Error 400: Bad Request when I use Esearch and Efetch

pythonbioinformaticsbiopythonncbi

Score: 3

Answers: 1

GML0011

Reputation: 21

Why would a special character cause an R function to drop components of the search string?

rstringsearchncbi

Score: 1

Answers: 1

Noorulain Islam

Reputation: 343

How to generate a PSSM matrix using PSI BLAST from BioPython

pythonpython-3.xbiopythonncbi

Score: 0

Answers: 1

Jesus Gonzales

Reputation: 1

I can't donwload complete genome of Culex pipiens pallens of the ncbi by API (Entrez): HTTP Error 400: Bad Request

pythondjangobiopythonncbi

Score: 0

Answers: 1

WilkeM

Reputation: 33

NCBI blast+ from commandline not recognizing the blastn command

pythonjupyter-notebookblastncbi

Score: 0

Answers: 2

Dylan Stephens

Reputation: 1

NCBI Rentrez timeout HTTP failure 400

rhttrncbirentrez

Score: 0

Answers: 0

Franck Dernoncourt

Reputation: 83457

How can I programmatically get the PMID from the DOI of a paper that isn't in PMC (i.e., that doesn't have a PMCID)?

bioinformaticspubmedncbidoi

Score: 2

Answers: 2

Loggy01

Reputation: 1

Can I use Entrez Direct to query multiple nucleotide accession version identifiers against a database without using epost?

bioinformaticsdna-sequencencbi

Score: 0

Answers: 1

notasfarwest

Reputation: 71

How do I download a large number of GenBank sequences using entrez_fetch in R?

rbioinformaticsdna-sequencencbirentrez

Score: 1

Answers: 0

Santiago

Reputation: 67

How to track which protein ID is linked to which gene ID with rentrez

rbioconductorncbirentrez

Score: 1

Answers: 1

Shinobe

Reputation: 9

Web scraping with Google Script, asynchronous website?

google-apps-scriptgoogle-sheetsweb-scrapingurlfetchncbi

Score: -1

Answers: 1

Ngwenyama

Reputation: 165

inconsistency with ftp sites in R

rncbi

Score: 1

Answers: 1

shalini

Reputation: 21

NCBI BLAST, nr database

databaseblastncbi

Score: 2

Answers: 0

Mathew

Reputation: 61

Multiprocessing with Python from a text file

pythonmultiprocessingdaskncbi

Score: 0

Answers: 1

sigma

Reputation: 1

NCBI Blast not running

pythonbiopythonblastncbi

Score: 0

Answers: 1

Programmer_101

Reputation: 11

Python webscraping from NCBI

pythonweb-scrapingtaxonomyncbi

Score: 0

Answers: 1

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StackOverflow Questions for Tag: ncbi

Adding retry to shell script

How to retrieve NCBI Entrez summary using gene name with Biopython?

Extracting viral host from Genbank record or Entrez query

Awk command to set variable name while matching a regular expression

Why do I get BioPython HTTPError: HTTP Error 400: Bad Request when I use Esearch and Efetch

Why would a special character cause an R function to drop components of the search string?

How to generate a PSSM matrix using PSI BLAST from BioPython

I can&#39;t donwload complete genome of Culex pipiens pallens of the ncbi by API (Entrez): HTTP Error 400: Bad Request

NCBI blast+ from commandline not recognizing the blastn command

NCBI Rentrez timeout HTTP failure 400

How can I programmatically get the PMID from the DOI of a paper that isn&#39;t in PMC (i.e., that doesn&#39;t have a PMCID)?

Can I use Entrez Direct to query multiple nucleotide accession version identifiers against a database without using epost?

How do I download a large number of GenBank sequences using entrez_fetch in R?

How to track which protein ID is linked to which gene ID with rentrez

Web scraping with Google Script, asynchronous website?

inconsistency with ftp sites in R

NCBI BLAST, nr database

Multiprocessing with Python from a text file

NCBI Blast not running

Python webscraping from NCBI

I can't donwload complete genome of Culex pipiens pallens of the ncbi by API (Entrez): HTTP Error 400: Bad Request

How can I programmatically get the PMID from the DOI of a paper that isn't in PMC (i.e., that doesn't have a PMCID)?