StackOverflow Questions for Tag: samtools

iiaawaak

Reputation: 27

multiple .bam to .fastq files with samtools

fastqsamtoolsbam

Score: 0

Answers: 0

MeghanT

Reputation: 61

samtools: command not found in bash script

bashsamtools

Score: 0

Answers: 1

Wisteria

Reputation: 1

How can I set up an iterator in samtools htsjdk?

javasamtoolsbam

Score: 0

Answers: 0

Erinda

Reputation: 1

Mapping the reads

samtoolsbam

Score: 0

Answers: 0

Johanna Aldersey

Reputation: 1

How can I extract a column using a string in commandline?

command-linesamtoolsbam

Score: 0

Answers: 0

faleevs

Reputation: 11

Samtools not working, but installing, because of libdeflate?

condasamtools

Score: 0

Answers: 0

Matthew Urbano

Reputation: 9

samtools view -F option appears to not be functioning

linuxubuntuoptional-parameterssamtools

Score: -3

Answers: 1

CandyClass

Reputation: 41

samtools and seqkit installation failed with conda (bioconda)

condabioinformaticssamtoolsbioconda

Score: 2

Answers: 0

user2416002

Reputation: 99

samtools - dyld: Library not loaded: @rpath/libcrypto.1.0.0.dylib

pythonopensslanacondasamtools

Score: 5

Answers: 2

user22691576

Reputation: 11

Issue Installing Bowtie2 and Samtools on Mac M2

installationsamtoolsapple-m2mambaforgebowtie2

Score: 1

Answers: 0

Karli

Reputation: 41

Medaka: unrecognized command 'tools' and samtools not found

ubuntubioinformaticssamtools

Score: 3

Answers: 0

xiaokalami

Reputation: 11

I made an error when using metawrap to binning

sequencebinningsamtools

Score: 1

Answers: 0

Fabiana Gambaro

Reputation: 1

SAM (Sequence Alignment/Map) Format Alignment Tags

duplicatestagssequence-alignmentsamtools

Score: 0

Answers: 0

sara777

Reputation: 1

Singularity could not open image

imagesingularity-containernextflowsamtools

Score: 0

Answers: 1

user20330606

Reputation: 111

How to run a command on multiple files within subdirectories with similar file suffix?

unixcommand-linefile-extensionsamtools

Score: 0

Answers: 1

Juliette G.

Reputation: 11

Samtools mpileup : error reading from input file

rvcf-variant-call-formatsequencingsamtools

Score: 1

Answers: 0

ww22an

Reputation: 51

How do I download BAM Files from SRA? I have the SRA Toolkit but I'm confused

rbioinformaticssamtoolsbam

Score: 1

Answers: 1

rbierman

Reputation: 81

Pysam view yield reads one at a time

pythonbioinformaticssamtoolspysam

Score: 1

Answers: 0

CCranney

Reputation: 31

Regular Expression - how to capture a number of characters specified in the string

pythonregexsamtools

Score: -1

Answers: 2

Mateo

Reputation: 63

In bioinformatics, what is a singleton?

bioinformaticssamtools

Score: 6

Answers: 1

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StackOverflow Questions for Tag: samtools

multiple .bam to .fastq files with samtools

samtools: command not found in bash script

How can I set up an iterator in samtools htsjdk?

Mapping the reads

How can I extract a column using a string in commandline?

Samtools not working, but installing, because of libdeflate?

samtools view -F option appears to not be functioning

samtools and seqkit installation failed with conda (bioconda)

samtools - dyld: Library not loaded: @rpath/libcrypto.1.0.0.dylib

Issue Installing Bowtie2 and Samtools on Mac M2

Medaka: unrecognized command &#39;tools&#39; and samtools not found

I made an error when using metawrap to binning

SAM (Sequence Alignment/Map) Format Alignment Tags

Singularity could not open image

How to run a command on multiple files within subdirectories with similar file suffix?

Samtools mpileup : error reading from input file

How do I download BAM Files from SRA? I have the SRA Toolkit but I&#39;m confused

Pysam view yield reads one at a time

Regular Expression - how to capture a number of characters specified in the string

In bioinformatics, what is a singleton?

Medaka: unrecognized command 'tools' and samtools not found

How do I download BAM Files from SRA? I have the SRA Toolkit but I'm confused