StackOverflow Questions for Tag: singularity-container
Reputation: 1
How to generate def file from singularity container, sif file or sandbox?
Score: 0
Views: 1202
Answers: 1
Reputation: 131
Is it possible to build an apptainer from a sandbox directory with a conda env in a def file?
Score: 0
Views: 73
Answers: 0
Reputation: 2214
how to find the executable file in sigularity sif
Score: 0
Views: 32
Answers: 0
Reputation: 25
Apptainer/Singularity Container built in local dev environment functions well, but does not work at all on cluster. How can I troubleshoot this?
Score: 0
Views: 125
Answers: 1
Reputation: 459
Build a Singularity container until writing to SIF?
Score: 0
Views: 30
Answers: 0
Reputation: 2782
failed to add as session directory: path . is not an absolute path in Singularity
Score: 1
Views: 552
Answers: 1
Reputation: 66
Defining Bind Paths and Mounts in Def Files
Score: 0
Views: 101
Answers: 0
Reputation: 75
Is there a way to run snakemake within a singularity container with computing cluster submission for individual rules?
Score: 1
Views: 80
Answers: 1
Reputation: 33
Starting Nextflow in a singularity container and use it to run another singularity container
Score: 0
Views: 212
Answers: 1
Reputation: 9037
CmdStan and OpenCL - Exception: compile_kernel: calculate : Unknown error -11
Score: 0
Views: 32
Answers: 0
Reputation: 11
Singularity/Nexflow script won't load Tensorflow from .sif on cluster
Score: 1
Views: 54
Answers: 1
Reputation: 1
singularity failing due to error squashfs filesystem seems not enabled
Score: 0
Views: 252
Answers: 1
Reputation: 153
How to run brew during an apptainer build given brew cannot run as root?
Score: 0
Views: 41
Answers: 0
Reputation: 1
Singularity container with OpenMPI and InfiniBand (UCX)
Score: 0
Views: 88
Answers: 0
Reputation: 11
Multiple conda environments in a single singularity container
Score: 0
Views: 33
Answers: 0
Reputation: 43
Running Singularity container without root as different user inside
Score: 1
Views: 1851
Answers: 1
Reputation: 9185
How to correctly activate micromamba environment inside Apptainer container automatically?
Score: 2
Views: 3240
Answers: 1
Reputation: 3
Installing Singularity Error: make: *** .builddir: No such file or directory. Stop
Score: 0
Views: 258
Answers: 0
Reputation: 11
Sticky bit on /tmp in container causing MPI code to hang
Score: 0
Views: 56
Answers: 0
Reputation: 1
Could not find any NVIDIA binaries on this host!, when i try to run docker image on server using singularity
Score: 0
Views: 138
Answers: 0