CODEWITHSUNDEEP
apache-sparkpysparkapache-spark-sqlmapreduce
Tim B
Tim B

Reputation: 3133

PySpark How to read CSV into Dataframe, and manipulate it

I'm quite new to pyspark and am trying to use it to process a large dataset which is saved as a csv file. I'd like to read CSV file into spark dataframe, drop some columns, and add new columns. How should I do that?

I am having trouble getting this data into a dataframe. This is a stripped down version of what I have so far:

def make_dataframe(data_portion, schema, sql):
    fields = data_portion.split(",")
    return sql.createDateFrame([(fields[0], fields[1])], schema=schema)

if __name__ == "__main__":
    sc = SparkContext(appName="Test")
    sql = SQLContext(sc)

    ...

    big_frame = data.flatMap(lambda line: make_dataframe(line, schema, sql))
                .reduce(lambda a, b: a.union(b))

    big_frame.write \
        .format("com.databricks.spark.redshift") \
        .option("url", "jdbc:redshift://<...>") \
        .option("dbtable", "my_table_copy") \
        .option("tempdir", "s3n://path/for/temp/data") \
        .mode("append") \
        .save()

    sc.stop()

This produces an error TypeError: 'JavaPackage' object is not callable at the reduce step.

Is it possible to do this? The idea with reducing to a dataframe is to be able to write the resulting data to a database (Redshift, using the spark-redshift package).

I have also tried using unionAll(), and map() with partial() but can't get it to work.

I am running this on Amazon's EMR, with spark-redshift_2.10:2.0.0, and Amazon's JDBC driver RedshiftJDBC41-1.1.17.1017.jar.

Upvotes: 7

Views: 41470

Answers (1)

Yaron
Yaron

Reputation: 10450

Update - answering also your question in comments:

Read data from CSV to dataframe: It seems that you only try to read CSV file into a spark dataframe.

If so - my answer here: https://stackoverflow.com/a/37640154/5088142 cover this.

The following code should read CSV into a spark-data-frame

import pyspark
sc = pyspark.SparkContext()
sql = SQLContext(sc)

df = (sql.read
         .format("com.databricks.spark.csv")
         .option("header", "true")
         .load("/path/to_csv.csv"))

// these lines are equivalent in Spark 2.0 - using [SparkSession][1]
from pyspark.sql import SparkSession

spark = SparkSession \
    .builder \
    .appName("Python Spark SQL basic example") \
    .config("spark.some.config.option", "some-value") \
    .getOrCreate()

spark.read.format("csv").option("header", "true").load("/path/to_csv.csv") 
spark.read.option("header", "true").csv("/path/to_csv.csv")

drop column

you can drop column using "drop(col)" https://spark.apache.org/docs/1.6.2/api/python/pyspark.sql.html

drop(col)

Returns a new DataFrame that drops the specified column.
Parameters: col – a string name of the column to drop, or a Column to drop.

>>> df.drop('age').collect()
[Row(name=u'Alice'), Row(name=u'Bob')]

>>> df.drop(df.age).collect()
[Row(name=u'Alice'), Row(name=u'Bob')]

>>> df.join(df2, df.name == df2.name, 'inner').drop(df.name).collect()
[Row(age=5, height=85, name=u'Bob')]

>>> df.join(df2, df.name == df2.name, 'inner').drop(df2.name).collect()
[Row(age=5, name=u'Bob', height=85)]

add column You can use "withColumn" https://spark.apache.org/docs/1.6.2/api/python/pyspark.sql.html

withColumn(colName, col)

Returns a new DataFrame by adding a column or replacing the existing column that has the same name.
Parameters: 

    colName – string, name of the new column.
    col – a Column expression for the new column.

>>> df.withColumn('age2', df.age + 2).collect()
[Row(age=2, name=u'Alice', age2=4), Row(age=5, name=u'Bob', age2=7)]

Note: spark has a lot of other functions which can be used (e.g. you can use "select" instead of "drop")

Upvotes: 11

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