CODEWITHSUNDEEP
pythonanacondascanpy
Ola
Ola

Reputation: 13

How do I solve "incompatible numba" error while installing Scanpy?

I tried installing the Scanpy package on Jupyter with "pip install Scanpy" but I got the the errors below;

ERROR: pynndescent 0.5.2 has requirement numba>=0.51.2, but you'll have numba 0.48.0 which is incompatible. ERROR: umap-learn 0.5.1 has requirement numba>=0.49, but you'll have numba 0.48.0 which is incompatible

When I tried to separately install an upgraded version of numba, I got the error below;

ERROR: Cannot uninstall 'llvmlite'. It is a distutils installed project and thus we cannot accurately determine which files belong to it which would lead to only a partial uninstall.

Upvotes: 1

Views: 7679

Answers (2)

Linux Geek
Linux Geek

Reputation: 967

  1. Run pip install --upgrade numba
  2. Run pip install scanpy

Upvotes: 3

Ege ENGİNDENİZ
Ege ENGİNDENİZ

Reputation: 16

you can try install with pip install -c numba numba=0.51.2.1rc1 if it doesn't work for you alternativly install RUN pip install llvmlite --ignore installed before pip install numba. HAVE A GOOD DAY:)

Upvotes: 0

Related Questions