StackOverflow Questions for Tag: scanpy

Danish Zahid Malik

Reputation: 685

anndata.concat resulting in 4x the size of the individual files causing memory issues

pythonbioinformaticsscanpyanndata

Score: 0

Answers: 0

Workhorse

Reputation: 1560

How to change font size in scanpy

pythonpython-3.xmatplotlibscanpy

Score: 0

Answers: 3

shugor

Reputation: 1

Scanpy Neighborhood Graph Construction Error: "'NoneType' object has no attribute 'split'"

pythonbioinformaticsscanpyanndata

Score: 0

Answers: 0

karlie022

Reputation: 21

Error in sparseMatrix(i = x[["indices"]][] + 1, p = x[["indptr"]][], x = x[["data"]][], : 'dims' must contain all (i,j) pairs

rseuratscanpy

Score: 2

Answers: 0

Sarah Patterson

Reputation: 1

Can't get sc.read_10x_mtx to read my data

pythontypeerrorbioinformaticsscanpy

Score: 0

Answers: 0

Jimmy

Reputation: 79

ModuleNotFoundError: No module named 'scanpy' (python)

pythonbioinformaticsscanpy

Score: 0

Answers: 2

pythonbeginner

Reputation: 63

How to plot proportion of cells in each cluster with scanpy?

pythonscanpy

Score: 0

Answers: 1

Starts13

Reputation: 21

Issue using infercnvpy.io.genomic_position_from_gtf

pythonrna-seqscanpy

Score: 2

Answers: 1

jonny jeep

Reputation: 417

change color clusters umap python

pythonscanpy

Score: 1

Answers: 0

n-ikiii16

Reputation: 11

ValueError: setting an array element with a sequence- Anndata object

typeerrorvalueerrorscanpy

Score: 1

Answers: 0

SumNeuron

Reputation: 5198

Python 3.11 decorator to convert a function into a dataclass for scikit-learn BaseEstimator TransformerMixin including type annotations

pythonpython-3.xscikit-learnpython-decoratorsscanpy

Score: 0

Answers: 0

Dan

Reputation: 21

Exporting a list of genes to .csv after carrying out sc.tl.rank_genes_groups in scanpy

pythonoutputscanpy

Score: 2

Answers: 2

Ofir Shorer

Reputation: 526

scanpy neighbors function: LLVM ERROR: Symbol not found: __svml_sqrtf8

pythonllvmnumbascanpy

Score: 0

Answers: 2

PesKchan

Reputation: 978

How to get user defined input for defining threshold in python script

pythonscanpy

Score: 0

Answers: 0

CeDeR

Reputation: 13

ValueError with file extension

pythonbioinformaticsvalueerrorscanpy

Score: -2

Answers: 1

pythonbeginner

Reputation: 63

How to save plot to google drive?

pythonmatplotlibgoogle-colaboratoryscanpy

Score: 0

Answers: 1

minoo

Reputation: 575

grid arrange tsne plots from a for loop in scanpy using matplotlib

pythongridvisualizationscanpytsne

Score: 0

Answers: 1

minoo

Reputation: 575

how can i add numeric scales to x and y axis of scanpy umap?

pythonmatplotlibvisualizationscanpy

Score: -1

Answers: 1

supigen

Reputation: 17

Please tell me how to fill an empty matrix with elements using for loop

pythonpandasdataframesimilarityscanpy

Score: 0

Answers: 1

supigen

Reputation: 17

I'm trying to subset from multiple obs in scanpy

pythonsubsetbioinformaticsscanpy

Score: 0

Answers: 1

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StackOverflow Questions for Tag: scanpy

anndata.concat resulting in 4x the size of the individual files causing memory issues

How to change font size in scanpy

Scanpy Neighborhood Graph Construction Error: &quot;&#39;NoneType&#39; object has no attribute &#39;split&#39;&quot;

Error in sparseMatrix(i = x[[&quot;indices&quot;]][] + 1, p = x[[&quot;indptr&quot;]][], x = x[[&quot;data&quot;]][], : &#39;dims&#39; must contain all (i,j) pairs

Can&#39;t get sc.read_10x_mtx to read my data

ModuleNotFoundError: No module named &#39;scanpy&#39; (python)

How to plot proportion of cells in each cluster with scanpy?

Issue using infercnvpy.io.genomic_position_from_gtf

change color clusters umap python

ValueError: setting an array element with a sequence- Anndata object

Python 3.11 decorator to convert a function into a dataclass for scikit-learn BaseEstimator TransformerMixin including type annotations

Exporting a list of genes to .csv after carrying out sc.tl.rank_genes_groups in scanpy

scanpy neighbors function: LLVM ERROR: Symbol not found: __svml_sqrtf8

How to get user defined input for defining threshold in python script

ValueError with file extension

How to save plot to google drive?

grid arrange tsne plots from a for loop in scanpy using matplotlib

how can i add numeric scales to x and y axis of scanpy umap?

Please tell me how to fill an empty matrix with elements using for loop

I&#39;m trying to subset from multiple obs in scanpy

Scanpy Neighborhood Graph Construction Error: "'NoneType' object has no attribute 'split'"

Error in sparseMatrix(i = x[["indices"]][] + 1, p = x[["indptr"]][], x = x[["data"]][], : 'dims' must contain all (i,j) pairs

Can't get sc.read_10x_mtx to read my data

ModuleNotFoundError: No module named 'scanpy' (python)

I'm trying to subset from multiple obs in scanpy