StackOverflow Questions for Tag: scanpy

John

Reputation: 161

getting "ValueError: Axis limits cannot be NaN or Inf" error when plotting PCs

plotpcascanpy

Score: 2

Answers: 1

Echo94

Reputation: 13

I am getting an error for a scanpy package when running it as bash script

pythonbashjupyter-notebookscanpy

Score: 0

Answers: 1

supigen

Reputation: 17

Adjust the cluster order of sc.pl.heatmap in scanpy

heatmapscanpy

Score: 1

Answers: 1

Byung Chul Jung

Reputation: 1

making cache using cache=True does not work in Scanpy

cachingoserrorscanpy

Score: 0

Answers: 1

JJUN

Reputation: 1

How can this for loop code work? (pandas, jupyter, python)

pandasdataframedictionaryfor-loopscanpy

Score: 0

Answers: 1

CelineDion

Reputation: 1098

Trying to concat a list of 12 AnnData objects but am getting duplicates

pythonscanpy

Score: 0

Answers: 1

sidrah maryam

Reputation: 55

subsetting anndata on basis of louvain clusters

pythonrna-seqscanpy

Score: 2

Answers: 2

Iqra Imtiaz

Reputation: 11

Having trouble in installing scanpy in python

pythonfailed-installationscanpy

Score: 1

Answers: 1

AyeTown

Reputation: 905

How do I create AnnData object from a pandas data frame count matrix?

pythonpandasscanpy

Score: 11

Answers: 3

SorenFlying

Reputation: 33

Receiving "TypeError: init() got an unexpected keyword argument 'basey'" In this tutorial

pythonpython-3.xrna-seqscanpy

Score: 3

Answers: 4

Greenline

Reputation: 13

How to get specific RNA sequence of Anndata?

python-3.xrna-seqscanpy

Score: 0

Answers: 1

Caroline

Reputation: 167

ValueError: could not convert string to float: 'singlet'

pythonpandasdataframescanpy

Score: 0

Answers: 0

吕同轩

Reputation: 1

Use SpatialDE to evaluate my anndata.h5ad but no result

pythonspatialscanpy

Score: 0

Answers: 0

Raktim Gohain

Reputation: 1

scanpy highly variable genes

pythonscanpy

Score: 0

Answers: 1

hiker

Reputation: 173

dataframe error when comparing expression levels: TypeError: Unordered Categoricals can only compare equality or not

pythonpandasscanpy

Score: 0

Answers: 1

Greenline

Reputation: 13

Gseapy: how to get gene list used for each pathway

pandaslistbioinformaticsrna-seqscanpy

Score: 0

Answers: 1

Caroline

Reputation: 167

ValueError: `X_pca` does not have enough PCs. Rerun `sc.pp.pca` with adjusted `n_comps`

pythoncluster-analysispcascanpy

Score: 1

Answers: 0

jpx

Reputation: 111

scv.pl.proportions(): numpy.AxisError in `Cellrank` workflow

seuratscanpy

Score: 0

Answers: 1

Ofir Shorer

Reputation: 526

scanpy correlation matrix with dendrogram

pythonmatrixpearson-correlationscanpy

Score: 0

Answers: 1

Greenline

Reputation: 13

Panda crosstab function getting number for conditions

pythonpandascrosstabscanpy

Score: 1

Answers: 1

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StackOverflow Questions for Tag: scanpy

getting &quot;ValueError: Axis limits cannot be NaN or Inf&quot; error when plotting PCs

I am getting an error for a scanpy package when running it as bash script

Adjust the cluster order of sc.pl.heatmap in scanpy

making cache using cache=True does not work in Scanpy

How can this for loop code work? (pandas, jupyter, python)

Trying to concat a list of 12 AnnData objects but am getting duplicates

subsetting anndata on basis of louvain clusters

Having trouble in installing scanpy in python

How do I create AnnData object from a pandas data frame count matrix?

Receiving &quot;TypeError: __init__() got an unexpected keyword argument &#39;basey&#39;&quot; In this tutorial

How to get specific RNA sequence of Anndata?

ValueError: could not convert string to float: &#39;singlet&#39;

Use SpatialDE to evaluate my anndata.h5ad but no result

scanpy highly variable genes

dataframe error when comparing expression levels: TypeError: Unordered Categoricals can only compare equality or not

Gseapy: how to get gene list used for each pathway

ValueError: `X_pca` does not have enough PCs. Rerun `sc.pp.pca` with adjusted `n_comps`

scv.pl.proportions(): numpy.AxisError in `Cellrank` workflow

scanpy correlation matrix with dendrogram

Panda crosstab function getting number for conditions

getting "ValueError: Axis limits cannot be NaN or Inf" error when plotting PCs

Receiving "TypeError: init() got an unexpected keyword argument 'basey'" In this tutorial

ValueError: could not convert string to float: 'singlet'