StackOverflow Questions for Tag: seurat

KOUSTAV ROY

Reputation: 11

Can't able to install Seurat in Rstudio

rseurat

Score: 1

Answers: 0

Melise Edwards

Reputation: 1

Trouble Adding Metadata to Seurat object

rdplyrseuratrna-seq

Score: 0

Answers: 1

Estevão Barcelos

Reputation: 21

How to Recreate Plots with Specific Sample Coordinates in a Seurat Object for GSE137710 Melanoma Data

seurattsne

Score: 0

Answers: 0

user15141432

Reputation: 31

Seurat FindClusters() seems to freeze after one iteration

rmultiprocessinghpcseurat

Score: 1

Answers: 1

drb219

Reputation: 3

Loosing ATAC metadata when merging with RNA - unable to find out why

rmergeseurat

Score: 0

Answers: 0

Allen Schweickart

Reputation: 25

ggplot2 overlapping causing issues with ridgeplot

rggplot2seurat

Score: 0

Answers: 1

SharonB

Reputation: 1

invalid class “LogMap” object: Rownames must be supplied When trying to create a Seurat object

rdataframeseurat

Score: 0

Answers: 1

RyanG

Reputation: 1

Is there a way to change the X axis on ridgeplots in Seurat?

seurat

Score: 0

Answers: 0

Fernanda França

Reputation: 31

Can't install older versions of Matrix package

rbioconductorseuratrna-seq

Score: 3

Answers: 0

nikhil int

Reputation: 309

Error loading paramSweep_v3 in DoubletFinder in R

rgenomeseuratrna-seq

Score: 0

Answers: 2

karlie022

Reputation: 21

Error in sparseMatrix(i = x[["indices"]][] + 1, p = x[["indptr"]][], x = x[["data"]][], : 'dims' must contain all (i,j) pairs

rseuratscanpy

Score: 2

Answers: 0

Rachel

Reputation: 11

Trouble installing Matrix package

rmatrixseurat

Score: 1

Answers: 0

Rayan El Kholdi

Reputation: 21

dispersion.cutoff and mean.cutoff don't seem to work at all with FindVariableFeatures()

rbioinformaticsseurat

Score: 0

Answers: 0

Sara Tavallaei

Reputation: 21

Error in if (b[i, "DataSet"] == "B") { : missing value where TRUE/FALSE needed

rr-factorseurat

Score: 1

Answers: 1

B. Frost

Reputation: 1

Problems using R after update in loadNamespace

windowspackagenamespacesseurat

Score: 0

Answers: 2

Christopher Kuo

Reputation: 41

RunUMAP code error after merged spatial transcriptomic objects

pcaseurat

Score: 4

Answers: 5

rjiminkook

Reputation: 1

Error while converting a .h5ad file into a Seurat object in R

rseurat

Score: 0

Answers: 1

drb219

Reputation: 3

When I merge 2 dataframes in R, my plots show NA cells exist but I can't find them in my Seurat object

rdataframemergeseurat

Score: 0

Answers: 1

user25466317

Reputation: 1

Comparison if GSEA in a single plot for 3 different cell types

seurat

Score: 0

Answers: 0

Juhee

Reputation: 13

R) Counts.csv.gz file to Seurat object

rseurat

Score: 1

Answers: 2

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StackOverflow Questions for Tag: seurat

Can&#39;t able to install Seurat in Rstudio

Trouble Adding Metadata to Seurat object

How to Recreate Plots with Specific Sample Coordinates in a Seurat Object for GSE137710 Melanoma Data

Seurat FindClusters() seems to freeze after one iteration

Loosing ATAC metadata when merging with RNA - unable to find out why

ggplot2 overlapping causing issues with ridgeplot

invalid class “LogMap” object: Rownames must be supplied When trying to create a Seurat object

Is there a way to change the X axis on ridgeplots in Seurat?

Can&#39;t install older versions of Matrix package

Error loading paramSweep_v3 in DoubletFinder in R

Error in sparseMatrix(i = x[[&quot;indices&quot;]][] + 1, p = x[[&quot;indptr&quot;]][], x = x[[&quot;data&quot;]][], : &#39;dims&#39; must contain all (i,j) pairs

Trouble installing Matrix package

dispersion.cutoff and mean.cutoff don&#39;t seem to work at all with FindVariableFeatures()

Error in if (b[i, &quot;DataSet&quot;] == &quot;B&quot;) { : missing value where TRUE/FALSE needed

Problems using R after update in loadNamespace

RunUMAP code error after merged spatial transcriptomic objects

Error while converting a .h5ad file into a Seurat object in R

When I merge 2 dataframes in R, my plots show NA cells exist but I can&#39;t find them in my Seurat object

Comparison if GSEA in a single plot for 3 different cell types

R) Counts.csv.gz file to Seurat object

Can't able to install Seurat in Rstudio

Can't install older versions of Matrix package

Error in sparseMatrix(i = x[["indices"]][] + 1, p = x[["indptr"]][], x = x[["data"]][], : 'dims' must contain all (i,j) pairs

dispersion.cutoff and mean.cutoff don't seem to work at all with FindVariableFeatures()

Error in if (b[i, "DataSet"] == "B") { : missing value where TRUE/FALSE needed

When I merge 2 dataframes in R, my plots show NA cells exist but I can't find them in my Seurat object