CODEWITHSUNDEEP
bioinformaticsbiopythonclustal
wingardium_leviosa98
wingardium_leviosa98

Reputation: 23

What is the problem with installing ClustalO?

I am trying to install clustalO in my python Colab notebook and I'm following the instructions on the website and I'm still getting errors. I've tried looking up multiple alternate ways to solve this online.

input: 
pip install clustalo

output: 
Collecting clustalo
  Using cached clustalo-0.1.2.tar.gz (3.6 kB)
  Preparing metadata (setup.py) ... done
Building wheels for collected packages: clustalo
  error: subprocess-exited-with-error
  
  × python setup.py bdist_wheel did not run successfully.
  │ exit code: 1
  ╰─> See above for output.
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  Building wheel for clustalo (setup.py) ... error
  ERROR: Failed building wheel for clustalo
  Running setup.py clean for clustalo
Failed to build clustalo
ERROR: Could not build wheels for clustalo, which is required to install pyproject.toml-based projects

I'm not sure if doing it manually would be better/ more helpful but I was able to download the files from https://github.com/benchling/clustalo-python and I am still not able to install and run it.

Upvotes: 0

Views: 126

Answers (0)

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