StackOverflow Questions for Tag: phylogeny

Carlo Meloni

Reputation: 129

Painting phylogenetic trees with phytools by edge.length

rphylogenyape-phylo

Score: 3

Answers: 1

Carlo Meloni

Reputation: 129

Add internal node to phylogenetic tree

rphylogenyape-phylo

Score: 1

Answers: 1

Geomicro

Reputation: 474

memory management for large phylogenetic distance matrix saved as a pd.desc

rmatrixmemoryphylogeny

Score: 2

Answers: 0

Michael Bucher

Reputation: 1

Challenges with Fitting PGLS Models on Binary Trait Subsets Using caper in R

rphylogeny

Score: 0

Answers: 0

El Dude

Reputation: 5618

D3 - Tree of life plot not showing data

svgd3.jsphylogeny

Score: 0

Answers: 1

Katrina Keith

Reputation: 13

Phylogenetic Diversity of parasites in biogeographic regions ERROR in lm.fit

rfunctiondplyrphylogeny

Score: 1

Answers: 0

LocusClassicus

Reputation: 93

Rotating labels for networx object in R

rphylogeny

Score: 0

Answers: 1

Geomicro

Reputation: 474

Editing list characters based on column values in a separate list

rlistphylogeny

Score: 0

Answers: 1

Geomicro

Reputation: 474

Memory management in phylogenetic tree pairwise distance calculations

rmemory-managementphylogeny

Score: 1

Answers: 1

Kirsty Gurney

Reputation: 1

Is my interpretation of pglmm (package phyr) output correct? Does model specification make sense?

covariancephylogeny

Score: 0

Answers: 0

Rue

Reputation: 1

R 'phytools' dotTree function does not seem to accept my dataset/tree?

rphylogenyape-phylo

Score: 0

Answers: 0

bacteria_ber

Reputation: 1

What is wrong with my phylogenetic tree pipeline based on the core genome such that they are branching off too many times?

bioinformaticsphylogenygenome

Score: 0

Answers: 0

Ditiro Moloto

Reputation: 1

How can I fix the Na/NaN function evaluation error

rphylogenyape

Score: 0

Answers: 0

Geomicro

Reputation: 474

tip labels and ASV names across a phylo, otu table, and tax table are not matching

rphylogeny

Score: 1

Answers: 1

Naomi Sun

Reputation: 59

BioPython phylo: collapsing nodes on tree if node in list and rename the respective collapsed node

biopythonphylogeny

Score: 1

Answers: 0

SG Kwon

Reputation: 125

Reorder newick tree for specific two samples to be closest

treehierarchyphylogeny

Score: 1

Answers: 1

koloeus

Reputation: 11

Increasing spacing between tips and tip labels on a phylogram in phytools?

rvisualizationphylogeny

Score: 0

Answers: 1

YYM17

Reputation: 353

Convert csv data to newick format (phylogenetic tree) in R

rphylogenyggtree

Score: 0

Answers: 1

Rob

Reputation: 1

Drawing a phylogenetic tree

rphylogenyape-phylo

Score: 0

Answers: 1

User777

Reputation: 11

Effect size values for PGLS ANOVA from packages nlme

anovanlmephylogeny

Score: 1

Answers: 0

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StackOverflow Questions for Tag: phylogeny

Painting phylogenetic trees with phytools by edge.length

Add internal node to phylogenetic tree

memory management for large phylogenetic distance matrix saved as a pd.desc

Challenges with Fitting PGLS Models on Binary Trait Subsets Using caper in R

D3 - Tree of life plot not showing data

Phylogenetic Diversity of parasites in biogeographic regions ERROR in lm.fit

Rotating labels for networx object in R

Editing list characters based on column values in a separate list

Memory management in phylogenetic tree pairwise distance calculations

Is my interpretation of pglmm (package phyr) output correct? Does model specification make sense?

R &#39;phytools&#39; dotTree function does not seem to accept my dataset/tree?

What is wrong with my phylogenetic tree pipeline based on the core genome such that they are branching off too many times?

How can I fix the Na/NaN function evaluation error

tip labels and ASV names across a phylo, otu table, and tax table are not matching

BioPython phylo: collapsing nodes on tree if node in list and rename the respective collapsed node

Reorder newick tree for specific two samples to be closest

Increasing spacing between tips and tip labels on a phylogram in phytools?

Convert csv data to newick format (phylogenetic tree) in R

Drawing a phylogenetic tree

Effect size values for PGLS ANOVA from packages nlme

R 'phytools' dotTree function does not seem to accept my dataset/tree?