StackOverflow Questions for Tag: apptainer

Soerendip

Reputation: 9185

How to run pytorch lightning with multiple GPUs, with Apptainer and SLURM?

pytorchslurmpytorch-lightninglightningapptainer

Score: 0

Answers: 0

Hamish Robertson

Reputation: 221

Apptainer build problem with Library of iterative solver - Quad precision is not enabled

ubuntufortransolverapptainer

Score: 2

Answers: 0

Faith Ogundimu

Reputation: 1

Trying to Run a Jupyter Notebook inside a Container Inside a Remote Server -

jupyter-notebookcondajupyterremote-serverapptainer

Score: -1

Answers: 1

NJ__

Reputation: 3

Binding single file in Singularity apptainer

data-bindingsingularity-containerapptainer

Score: 0

Answers: 0

AlexGu

Reputation: 71

R-dependence error in using apptainer to build container

rtextapptainer

Score: 1

Answers: 1

student

Reputation: 11

Apptainer not using GPU

gpusingularity-containerapptainer

Score: 1

Answers: 0

Jannik Schneider

Reputation: 11

Connection to container works but Intellisense and Debugger doesnt recognize it

visual-studio-codedebuggingcontainersapptainer

Score: 1

Answers: 0

tgbrooks

Reputation: 311

Snakemake: using workflow.source_path with apptainer containers

snakemakesingularity-containerapptainer

Score: 0

Answers: 0

Soerendip

Reputation: 9185

/etc/conda/activate.d/activate-binutils_linux-64.sh:10:47: parameter expansion requires a literal

condaapptainer

Score: 0

Answers: 0

gannex

Reputation: 131

Is it possible to build an apptainer from a sandbox directory with a conda env in a def file?

pythoncondaminicondasingularity-containerapptainer

Score: 0

Answers: 0

Homap

Reputation: 2214

how to find the executable file in sigularity sif

singularity-containerapptainer

Score: 0

Answers: 0

Joss Leehan

Reputation: 25

Apptainer/Singularity Container built in local dev environment functions well, but does not work at all on cluster. How can I troubleshoot this?

cluster-computingsingularity-containerapptainer

Score: 0

Answers: 1

Eric Auld

Reputation: 1244

Two shells on same apptainer instance?

apptainer

Score: 1

Answers: 2

Clement Faisandier

Reputation: 66

Defining Bind Paths and Mounts in Def Files

containerssingularity-containerapptainer

Score: 0

Answers: 0

Harry Matthews

Reputation: 153

How to run brew during an apptainer build given brew cannot run as root?

homebrewsingularity-containerapptainer

Score: 0

Answers: 0

Matt

Reputation: 75

Equivalent of "context" in docker build for apptainer build?

dockerapptainer

Score: 0

Answers: 1

Arindam Ghosh

Reputation: 113

Building docker interactively

rdockerubuntuapptainer

Score: 1

Answers: 2

Alberto Lusiani

Reputation: 16

Why apptainer images lack files under /usr/share/info and /use/share/man/man*?

apptainer

Score: 0

Answers: 0

Soerendip

Reputation: 9185

How to correctly activate micromamba environment inside Apptainer container automatically?

jupyter-labsingularity-containerapptainermicromamba

Score: 2

Answers: 1

John Henckel

Reputation: 11387

Why does the apptainer seem to have access to my home directory

apptainer

Score: 1

Answers: 1

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StackOverflow Questions for Tag: apptainer

How to run pytorch lightning with multiple GPUs, with Apptainer and SLURM?

Apptainer build problem with Library of iterative solver - Quad precision is not enabled

Trying to Run a Jupyter Notebook inside a Container Inside a Remote Server -

Binding single file in Singularity apptainer

R-dependence error in using apptainer to build container

Apptainer not using GPU

Connection to container works but Intellisense and Debugger doesnt recognize it

Snakemake: using workflow.source_path with apptainer containers

/etc/conda/activate.d/activate-binutils_linux-64.sh:10:47: parameter expansion requires a literal

Is it possible to build an apptainer from a sandbox directory with a conda env in a def file?

how to find the executable file in sigularity sif

Apptainer/Singularity Container built in local dev environment functions well, but does not work at all on cluster. How can I troubleshoot this?

Two shells on same apptainer instance?

Defining Bind Paths and Mounts in Def Files

How to run brew during an apptainer build given brew cannot run as root?

Equivalent of &quot;context&quot; in docker build for apptainer build?

Building docker interactively

Why apptainer images lack files under /usr/share/info and /use/share/man/man*?

How to correctly activate micromamba environment inside Apptainer container automatically?

Why does the apptainer seem to have access to my home directory

Equivalent of "context" in docker build for apptainer build?