StackOverflow Questions for Tag: singularity-container

Varvara Vladimirova

Reputation: 21

Load library directory error (R, Julia and container)

rdockerubuntujuliasingularity-container

Score: 2

Answers: 0

M K

Reputation: 31

How to pass host environment variables to singularity build?

bashsslpipssl-certificatesingularity-container

Score: 2

Answers: 1

NJ__

Reputation: 3

Binding single file in Singularity apptainer

data-bindingsingularity-containerapptainer

Score: 0

Answers: 0

Giulia B.

Reputation: 41

Difference between working directory of docker and singularity

dockersingularity-container

Score: 4

Answers: 1

student

Reputation: 11

Apptainer not using GPU

gpusingularity-containerapptainer

Score: 1

Answers: 0

Victor Cat

Reputation: 25

Syntax error in R code executed with Slurm and Singularity

rbashslurmsingularity-container

Score: 1

Answers: 1

Murf

Reputation: 146

Singularity Container not finding files after transformation from docker

pythondockersingularity-container

Score: 0

Answers: 0

LudvigH

Reputation: 4736

Intall python package with pip, respecting current installation

pythonpipjaxsingularity-container

Score: 1

Answers: 1

Niandra Lades

Reputation: 47

Is singularity enviorment perserved for Python's subprocess?

pythonlinuxsubprocesssingularity-container

Score: 0

Answers: 0

Vivek Katial

Reputation: 626

python - [tool.poetry] section not found in pyproject.toml when building Singularity Container

pythonpython-poetrysingularity-container

Score: 6

Answers: 2

tgbrooks

Reputation: 311

Snakemake: using workflow.source_path with apptainer containers

snakemakesingularity-containerapptainer

Score: 0

Answers: 0

Abdelghani

Reputation: 745

Singularity : run container and preserving env variables

dockerenvironment-variablescontainerssingularity-container

Score: 1

Answers: 1

Jack Td Oneil

Reputation: 1

Singularity (aka Apptainer) not able mount fusemount inside container on RHEL 8.10 system be hardened with CIS benchmark

singularity-container

Score: 0

Answers: 0

ramiro

Reputation: 93

Program in docker container not found when using singularity

dockersingularity-container

Score: 0

Answers: 0

xie186

Reputation: 509

In .snakemake/singularity/, how to know which simg file corresponding to which docker image?

snakemakesingularity-container

Score: 0

Answers: 0

The Ruler

Reputation: 1

How to generate def file from singularity container, sif file or sandbox?

dockercontainerssingularity-container

Score: 0

Answers: 1

gannex

Reputation: 131

Is it possible to build an apptainer from a sandbox directory with a conda env in a def file?

pythoncondaminicondasingularity-containerapptainer

Score: 0

Answers: 0

Homap

Reputation: 2204

how to find the executable file in sigularity sif

singularity-containerapptainer

Score: 0

Answers: 0

Joss Leehan

Reputation: 25

Apptainer/Singularity Container built in local dev environment functions well, but does not work at all on cluster. How can I troubleshoot this?

cluster-computingsingularity-containerapptainer

Score: 0

Answers: 1

richelbilderbeek

Reputation: 459

Build a Singularity container until writing to SIF?

singularity-container

Score: 0

Answers: 0

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StackOverflow Questions for Tag: singularity-container

Load library directory error (R, Julia and container)

How to pass host environment variables to singularity build?

Binding single file in Singularity apptainer

Difference between working directory of docker and singularity

Apptainer not using GPU

Syntax error in R code executed with Slurm and Singularity

Singularity Container not finding files after transformation from docker

Intall python package with pip, respecting current installation

Is singularity enviorment perserved for Python&#39;s subprocess?

python - [tool.poetry] section not found in pyproject.toml when building Singularity Container

Snakemake: using workflow.source_path with apptainer containers

Singularity : run container and preserving env variables

Singularity (aka Apptainer) not able mount fusemount inside container on RHEL 8.10 system be hardened with CIS benchmark

Program in docker container not found when using singularity

In .snakemake/singularity/, how to know which simg file corresponding to which docker image?

How to generate def file from singularity container, sif file or sandbox?

Is it possible to build an apptainer from a sandbox directory with a conda env in a def file?

how to find the executable file in sigularity sif

Apptainer/Singularity Container built in local dev environment functions well, but does not work at all on cluster. How can I troubleshoot this?

Build a Singularity container until writing to SIF?

Is singularity enviorment perserved for Python's subprocess?