StackOverflow Questions for Tag: mdanalysis

Fahim Newaz

Reputation: 13

Is it possible to write off diagonal pressure tensor or viscosity in Amber?

pythonmdanalysis

Score: 0

Answers: 0

rauk72

Reputation: 1

How can I calculate the RDF using only part of the trajectory in MDAnalysis?

pythonmdanalysis

Score: 0

Answers: 1

Fernando Oliveir Tytor

Reputation: 7

Probability Density Function with Ramachandran function of MDAnalysis in Python

pythonprobability-densitymdanalysis

Score: -1

Answers: 1

Alessia Karasani

Reputation: 1

Python MDanalysis package: PermissionError: [Errno 1] Operation not permitted

pythonuniversepermissionerrormdanalysis

Score: 0

Answers: 0

Giovanni Wences

Reputation: 19

structures corresponding to metastable states in python

pythondata-analysisbiopythonhidden-markov-modelsmdanalysis

Score: 0

Answers: 0

Viswa Vittal

Reputation: 9

MD analysis using Python

pythonsimulationorientationprotein-databasemdanalysis

Score: 1

Answers: 1

Jovey Osagie

Reputation: 13

Understanding Density object obtained from MDAnalaysis DensityAnalysis

pythonnumpy-ndarraymdanalysis

Score: 1

Answers: 1

Alvea Tasneem

Reputation: 11

Regarding tau_max in Survival Probability calculation using MDAnalysis python package

pythonprobabilitysurvivalmdanalysis

Score: 0

Answers: 1

Coldy_14

Reputation: 1

I have a DX file containing PME data, I want to plot an average potential profile through python code

mdanalysis

Score: 0

Answers: 0

ludwig_boltzplatz

Reputation: 31

Iterating over molecules from LAMMPS dumpfile using MDAnalysis

pythonlammpsmdanalysis

Score: 0

Answers: 0

Francho Nerín Fonz

Reputation: 321

MDAnalysis: Trajectories saved from Readers of the same Universe are incorrect

pythonpython-3.xmdanalysis

Score: 1

Answers: 1

Peggy Brooks

Reputation: 1

Why is the curve fitting in MDAnalysis persistence length not working?

pythonmdanalysis

Score: 0

Answers: 0

Advaita

Reputation: 45

TPRParser in MDAnanlysis has no attribute 'parser'?

pythonargparsemdanalysis

Score: 1

Answers: 1

DJ Boltzmann

Reputation: 13

Install and Import MDAnalysis on Google Colaboratory for Python? Problems

pythongitgoogle-colaboratorymdanalysis

Score: 1

Answers: 2

Advaita

Reputation: 45

How to calculate center of mass of proteins using MDAnalysis?

mdanalysis

Score: 2

Answers: 1

Confused_scientist

Reputation: 35

MDAnalysis comparing position of ion in trajectory to previous ts

python-3.xmdanalysis

Score: 1

Answers: 2

Francho Nerín Fonz

Reputation: 321

How to iterate efficiently through MDAnalysis trajectory and save residue attribute time series?

pythonmdanalysis

Score: 2

Answers: 1

Confused_scientist

Reputation: 35

MDAnalysis how to index the charge?

pythonmdanalysis

Score: 0

Answers: 1

Viswa Vittal

Reputation: 9

Data analysis - MD analysis Python

pythonmdanalysis

Score: -2

Answers: 1

Confused_scientist

Reputation: 35

Getting the charge of a single atom, per loop in MD Analysis

mdanalysis

Score: 1

Answers: 1

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StackOverflow Questions for Tag: mdanalysis

Is it possible to write off diagonal pressure tensor or viscosity in Amber?

How can I calculate the RDF using only part of the trajectory in MDAnalysis?

Probability Density Function with Ramachandran function of MDAnalysis in Python

Python MDanalysis package: PermissionError: [Errno 1] Operation not permitted

structures corresponding to metastable states in python

MD analysis using Python

Understanding Density object obtained from MDAnalaysis DensityAnalysis

Regarding tau_max in Survival Probability calculation using MDAnalysis python package

I have a DX file containing PME data, I want to plot an average potential profile through python code

Iterating over molecules from LAMMPS dumpfile using MDAnalysis

MDAnalysis: Trajectories saved from Readers of the same Universe are incorrect

Why is the curve fitting in MDAnalysis persistence length not working?

TPRParser in MDAnanlysis has no attribute &#39;parser&#39;?

Install and Import MDAnalysis on Google Colaboratory for Python? Problems

How to calculate center of mass of proteins using MDAnalysis?

MDAnalysis comparing position of ion in trajectory to previous ts

How to iterate efficiently through MDAnalysis trajectory and save residue attribute time series?

MDAnalysis how to index the charge?

Data analysis - MD analysis Python

Getting the charge of a single atom, per loop in MD Analysis

TPRParser in MDAnanlysis has no attribute 'parser'?