StackOverflow Questions for Tag: pysam

todua10

Reputation: 3

How do I fix the error when installing the pysam package?

pythonpippackageconsolepysam

Score: 0

Answers: 2

Emily Byrne

Reputation: 1

How can I get past "package not found" even when Conda forge has been added?

anacondapysam

Score: 0

Answers: 2

Tess Broos

Reputation: 1

PySAM: CEC performance model with user entered specifications

jsonsampysam

Score: 0

Answers: 0

Greg Dougherty

Reputation: 3471

How do i get and use AlignmentHeader from pysam?

bampysam

Score: 0

Answers: 1

angelina.Z.H

Reputation: 1

MapDamage [E::fai_retrieve] Failed to retrieve block: unexpected end of file, in snakemake pipeline

pythondata-retrievalpysam

Score: 0

Answers: 1

Arthur Martineau

Reputation: 1

Converting nested tuple 0 into row in matrix

pythondictionarytuplespysam

Score: 0

Answers: 1

user3375672

Reputation: 3768

Python consume an iterator pair-wise

pythoniteratorpysam

Score: 2

Answers: 1

rbierman

Reputation: 91

Pysam view yield reads one at a time

pythonbioinformaticssamtoolspysam

Score: 1

Answers: 0

Sergio.pv

Reputation: 1400

unable to execute 'x86_64-conda_cos6-linux-gnu-gcc': No such file or directory (pysam installation)

linuxpython-2.7gccanacondapysam

Score: 21

Answers: 6

fonpe

Reputation: 23

sum elements in python list if match condition

pythonbampysam

Score: 2

Answers: 3

azural

Reputation: 21

Docker installation testing fails because of missing dependency which was installed earlier

pythondockerdockerfilepysamhtslib

Score: 1

Answers: 0

P. Solar

Reputation: 359

Wrong plotting data (insert size vs base quality means from BAM file)

pythonmatplotlibplotsamtoolspysam

Score: 0

Answers: 0

Loki

Reputation: 99

Changing an orientation of a reverse sequence in the fasta file doesnt work

pythonpython-2.7pysam

Score: 0

Answers: 1

Yvette Moreno

Reputation: 1

Cannot install pysam

pythonbashpipdebianpysam

Score: 0

Answers: 0

twinsinc

Reputation: 173

How to use pysam.view() to convert SAM to BAM

pythonsamsamtoolspysambam

Score: 1

Answers: 2

user2725109

Reputation: 2386

How to cache reads?

pythoncachingbioinformaticssamtoolspysam

Score: 15

Answers: 3

Laura

Reputation: 13

Bam file processing function code with parseargs in Python and Ubuntu

pythonpandasargparsepysambam

Score: 0

Answers: 0

Kyle

Reputation: 33739

Why does installing pysam python package fail?

pythonpython-3.xpippysam

Score: 4

Answers: 2

ekofman

Reputation: 419

Snakemake Conda environment does not seem to be activating though it says it is

pythoncondasnakemakesamtoolspysam

Score: 1

Answers: 1

ShanZhengYang

Reputation: 17651

Is there a way to save an entire "alignment field/column" into a NumPy array using Samtools?

pythonnumpysamtoolspysambam

Score: 2

Answers: 2

PreviousPage 1Next

StackOverflow Questions for Tag: pysam

How do I fix the error when installing the pysam package?

How can I get past &quot;package not found&quot; even when Conda forge has been added?

PySAM: CEC performance model with user entered specifications

How do i get and use AlignmentHeader from pysam?

MapDamage [E::fai_retrieve] Failed to retrieve block: unexpected end of file, in snakemake pipeline

Converting nested tuple 0 into row in matrix

Python consume an iterator pair-wise

Pysam view yield reads one at a time

unable to execute &#39;x86_64-conda_cos6-linux-gnu-gcc&#39;: No such file or directory (pysam installation)

sum elements in python list if match condition

Docker installation testing fails because of missing dependency which was installed earlier

Wrong plotting data (insert size vs base quality means from BAM file)

Changing an orientation of a reverse sequence in the fasta file doesnt work

Cannot install pysam

How to use pysam.view() to convert SAM to BAM

How to cache reads?

Bam file processing function code with parseargs in Python and Ubuntu

Why does installing pysam python package fail?

Snakemake Conda environment does not seem to be activating though it says it is

Is there a way to save an entire &quot;alignment field/column&quot; into a NumPy array using Samtools?

How can I get past "package not found" even when Conda forge has been added?

unable to execute 'x86_64-conda_cos6-linux-gnu-gcc': No such file or directory (pysam installation)

Is there a way to save an entire "alignment field/column" into a NumPy array using Samtools?