StackOverflow Questions for Tag: rentrez

Hope Lappen

Reputation: 11

Extracting a list from PubMed XML in R and adding to data frame/tibble

rxmldataframepubmedrentrez

Score: 1

Answers: 3

AnonymousMe

Reputation: 569

NotXMLError: Failed to parse the XML data

pythonbiopythonpubmedrentrezpubmed-api

Score: 1

Answers: 2

Brianna Nissley

Reputation: 1

Why does my for loop in Python never stop running?

pythonbiopythonblastncbirentrez

Score: 0

Answers: 1

Abdullah Afzal

Reputation: 1

Why does my pattern extractor code return false positives?

pythonweb-scrapingbiopythonncbirentrez

Score: 0

Answers: 0

wbart

Reputation: 27

Error in is.na(output) || !is.character(output) : 'length = 3' in coercion to 'logical(1)'

rerror-handlingrentrez

Score: 0

Answers: 0

D Greenwood

Reputation: 446

Rentrez pubmed search - order by descending publication date

rpubmedrentrez

Score: 0

Answers: 1

Dylan Stephens

Reputation: 1

NCBI Rentrez timeout HTTP failure 400

rhttrncbirentrez

Score: 0

Answers: 0

notasfarwest

Reputation: 71

How do I download a large number of GenBank sequences using entrez_fetch in R?

rbioinformaticsdna-sequencencbirentrez

Score: 1

Answers: 0

notasfarwest

Reputation: 71

Rentrez is pulling the wrong data from NCBI in R?

rbioinformaticsdna-sequencerentrez

Score: 1

Answers: 1

notasfarwest

Reputation: 71

Downloading DNA sequence data in R using entrez_fetch: cannot retrieve query

rbioinformaticsrentrez

Score: 0

Answers: 1

Santiago

Reputation: 67

How to track which protein ID is linked to which gene ID with rentrez

rbioconductorncbirentrez

Score: 1

Answers: 1

mickmars51

Reputation: 1

Extracting author and affiliation from xml file retrieved using rentrez

rdatabasepubmedrentrezpubmed-api

Score: 0

Answers: 1

tataṣe

Reputation: 59

using pubmedR to search by doi

rrentrez

Score: 1

Answers: 1

BioInfoMan28

Reputation: 1

How do I provide my Identity / Email when connecting to NCBI through Rentrez?

rbioinformaticsncbirentrez

Score: 0

Answers: 1

Arturo

Reputation: 354

Using R to fetch a Pubmed abstract by using its title

rpubmedrentrez

Score: 1

Answers: 2

Eugene Bu

Reputation: 51

Obtaining data from NCBI gene database with R

htmlrrseleniumncbirentrez

Score: 1

Answers: 1

tadeufontes

Reputation: 477

How to retrieve data using the rentrez package by giving a list of query names instead of a single one?

rrentrez

Score: 0

Answers: 1

user70711

Reputation: 141

Is it possible to get the number of times an article has been cited?

python-3.xweb-crawlercitationspubmedrentrez

Score: 0

Answers: 2

rumple.weed37

Reputation: 59

rentrez entrez_summary premature EOF

rpubmedrentrez

Score: 1

Answers: 0

Martin Graßhoff

Reputation: 65

Request limit and lapply

rlapplyncbirentrez

Score: 0

Answers: 0

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StackOverflow Questions for Tag: rentrez

Extracting a list from PubMed XML in R and adding to data frame/tibble

NotXMLError: Failed to parse the XML data

Why does my for loop in Python never stop running?

Why does my pattern extractor code return false positives?

Error in is.na(output) || !is.character(output) : &#39;length = 3&#39; in coercion to &#39;logical(1)&#39;

Rentrez pubmed search - order by descending publication date

NCBI Rentrez timeout HTTP failure 400

How do I download a large number of GenBank sequences using entrez_fetch in R?

Rentrez is pulling the wrong data from NCBI in R?

Downloading DNA sequence data in R using entrez_fetch: cannot retrieve query

How to track which protein ID is linked to which gene ID with rentrez

Extracting author and affiliation from xml file retrieved using rentrez

using pubmedR to search by doi

How do I provide my Identity / Email when connecting to NCBI through Rentrez?

Using R to fetch a Pubmed abstract by using its title

Obtaining data from NCBI gene database with R

How to retrieve data using the rentrez package by giving a list of query names instead of a single one?

Is it possible to get the number of times an article has been cited?

rentrez entrez_summary premature EOF

Request limit and lapply

Error in is.na(output) || !is.character(output) : 'length = 3' in coercion to 'logical(1)'